HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:33.4 nTPM
HPA Brain:86.8 nTPM
GTEx:33.4 nTPM
FANTOM5:203.4 Scaled Tags Per Million
Pig:126.1 nTPM
Mouse:100.3 nTPM
Allen mouse:8.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029718Antibody HPA029720Antibody CAB033868
Glial cells MediumLowMedium
Neuronal cells HighHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 86.8
Sample id Sample description nTPM
Hippocampus
nTPM: 85.3
2621 Female, age 67, right hemisphere 102.2
1898 Male, age 80, left hemisphere 92.1
1855 Male, age 76, left hemisphere 89.4
2148 Female, age 91, left hemisphere 78.8
2529 Female, age 94, left hemisphere 76.3
1911 Female, age 85, right hemisphere 73.4
Dentate gyrus
nTPM: 85.1
2010 Male, age 76, both hemispheres 104.9
2530 Female, age 94, left hemisphere 99.3
2246 Female, age 85, both hemispheres 91.9
1927 Female, age 91, both hemispheres 77.6
2531 Female, age 67, both hemispheres 70.2
2528 Male, age 74, both hemispheres 66.6
Entorhinal gyrus
nTPM: 77.7
1938 Female, age 85, left hemisphere 85.7
2613 Female, age 94, left hemisphere 83.2
1787 Male, age 76, left hemisphere 78.2
2117 Female, age 91, right hemisphere 76.3
2764 Male, age 80, right hemisphere 75.3
2686 Male, age 75, right hemisphere 67.3
Hippocampus, CA1
nTPM: 86.8
2749 Male, age 80, left hemisphere 114.9
1873 Female, age 85, both hemispheres 90.9
2045 Male, age 76, both hemispheres 82.7
2527 Male, age 74, both hemispheres 81.9
2082 Female, age 91, right hemisphere 63.8
Hippocampus, CA2
nTPM: 76.7
1892 Male, age 76, both hemispheres 84.5
1963 Male, age 80, left hemisphere 83.4
2437 Female, age 94, left hemisphere 82.3
2249 Male, age 74, both hemispheres 74.7
1940 Female, age 85, left hemisphere 69.9
2113 Female, age 91, right hemisphere 65.4
Hippocampus, CA3
nTPM: 82.0
2137 Male, age 80, left hemisphere 94.3
2861 Female, age 67, both hemispheres 85.7
2620 Female, age 94, left hemisphere 84.8
2436 Male, age 74, both hemispheres 81.0
1867 Male, age 76, both hemispheres 74.5
1891 Female, age 85, both hemispheres 71.5
Parahippocampal cortex
nTPM: 81.1
2245 Female, age 91, both hemispheres 100.5
2532 Female, age 72, left hemisphere 90.4
1850 Male, age 80, both hemispheres 85.3
2250 Female, age 67, right hemisphere 81.6
2622 Female, age 67, right hemisphere 81.4
2018 Male, age 76, both hemispheres 77.1
2692 Male, age 74, both hemispheres 75.8
2693 Female, age 94, both hemispheres 74.5
1933 Female, age 85, both hemispheres 72.5
1990 Female, age 91, right hemisphere 72.3
Perirhinal gyrus
nTPM: 84.7
1847 Female, age 91, left hemisphere 93.1
1794 Male, age 80, right hemisphere 86.9
1841 Female, age 85, right hemisphere 83.9
2521 Female, age 94, right hemisphere 83.1
2848 Male, age 76, right hemisphere 76.4
Subiculum
nTPM: 77.2
2438 Female, age 94, left hemisphere 94.7
2619 Male, age 74, both hemispheres 78.7
2042 Male, age 76, both hemispheres 75.6
1977 Female, age 85, both hemispheres 75.2
1901 Male, age 80, both hemispheres 75.0
2729 Female, age 91, right hemisphere 64.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.4
Samples: 197

Max nTPM: 72.6
Min nTPM: 19.9
Std nTPM: 7.7
Median nTPM: 32.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 72.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 53.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 53.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 52.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 51.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 51.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 51.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 50.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 49.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 49.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 203.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 203.4
FF:10169-103B7 60 years, female 223.2
FF:10153-102I9 76 years, female 183.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 126.1
Pig sample Sample description nTPM
Subiculum
nTPM: 113.2
Samples: 4

Max nTPM: 141.1
Min nTPM: 101.3
Sample A Female 141.1
Sample B Female 101.3
Sample C Male 102.3
Sample D Male 107.9
Dorsal hippocampus
nTPM: 126.1
Samples: 4

Max nTPM: 151.4
Min nTPM: 103.8
Sample A Female 151.4
Sample B Female 123.9
Sample C Male 125.1
Sample D Male 103.8
Entorhinal cortex
nTPM: 107.8
Samples: 4

Max nTPM: 112.7
Min nTPM: 96.2
Sample A Female 110.0
Sample B Female 112.3
Sample C Male 112.7
Sample D Male 96.2
Ventral hippocampus
nTPM: 114.4
Samples: 4

Max nTPM: 126.7
Min nTPM: 88.8
Sample A Female 122.8
Sample B Female 88.8
Sample C Male 126.7
Sample D Male 119.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 100.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.7
Samples: 4

Max nTPM: 109.1
Min nTPM: 94.9
Sample A Male 95.5
Sample B Male 99.2
Sample C Female 94.9
Sample D Female 109.1
Hippocampal formation
nTPM: 100.3
Samples: 4

Max nTPM: 105.0
Min nTPM: 90.6
Sample A Male 101.6
Sample B Male 104.0
Sample C Female 105.0
Sample D Female 90.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.9
68445113 Antisense, RP_050111_02_G10, Mouse strain C57BL/6J (56 days, male) 16.8
881 Antisense, RP_Baylor_102992, Mouse strain C57BL/6J (56 days, male) 0.9

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