MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.9 nTPM
HPA Brain:29.9 nTPM
GTEx:4.9 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:8.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2411 Female, age 72, unknown 30.1
1830 Male, age 51, unknown 29.0
1870 Female, age 42, unknown 27.8
1833 Male, age 53, unknown 26.7
1827 Male, age 72, unknown 26.4
2219 Male, age 76, both hemispheres 26.4
2666 Male, age 74, left hemisphere 25.9
2019 Male, age 18, unknown 25.4
2828 Female, age 72, unknown 25.2
2586 Male, age 75, left hemisphere 20.6
Dorsal raphe nucleus
nTPM: 23.3
2750 Male, age 76, both hemispheres 25.9
2016 Female, age 72, unknown 25.0
2047 Male, age 72, unknown 23.1
1828 Male, age 53, unknown 23.0
2298 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 26.4
1890 Male, age 53, unknown 28.1
1848 Female, age 42, unknown 26.9
2097 Female, age 72, unknown 25.6
2849 Male, age 72, unknown 25.0
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 24.4
1947 Male, age 18, unknown 27.9
2502 Female, age 75, unknown 23.5
1795 Male, age 51, unknown 22.0
Periaquaductal grey, dorsal
nTPM: 23.9
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 24.0
1840 Male, age 53, unknown 24.0
2850 Male, age 76, both hemispheres 20.2
Periaquaductal grey, lateral
nTPM: 23.9
2053 Male, age 18, unknown 25.7
2140 Male, age 76, both hemispheres 23.6
2272 Male, age 74, both hemispheres 22.4
Pretectal area
nTPM: 23.6
2316 Male, age 76, right hemisphere 27.4
1815 Male, age 53, unknown 25.5
2825 Male, age 18, unknown 25.5
2224 Female, age 72, unknown 24.2
2273 Male, age 74, both hemispheres 23.5
2407 Male, age 75, both hemispheres 23.4
1816 Male, age 51, unknown 23.2
2007 Male, age 72, unknown 23.2
1817 Female, age 42, unknown 21.8
1944 Female, age 72, unknown 21.8
2667 Female, age 75, unknown 20.6
Red nucleus
nTPM: 29.9
2588 Male, age 74, left hemisphere 34.1
2503 Female, age 72, unknown 33.8
1904 Male, age 53, unknown 31.6
1865 Male, age 51, unknown 31.3
1954 Female, age 42, unknown 30.5
1821 Female, age 72, unknown 29.9
2227 Male, age 72, unknown 29.8
2823 Male, age 76, right hemisphere 29.3
2725 Female, age 75, unknown 29.2
2769 Male, age 72, unknown 27.6
2785 Male, age 18, unknown 27.5
2584 Male, age 75, left hemisphere 23.7
Substantia nigra
nTPM: 25.9
2409 Female, age 72, unknown 36.9
2241 Male, age 72, unknown 27.7
2583 Male, age 75, right hemisphere 27.4
2590 Female, age 75, unknown 27.2
1889 Female, age 72, unknown 25.5
1851 Male, age 51, unknown 25.1
2699 Male, age 18, unknown 24.0
1916 Female, age 42, unknown 22.5
1941 Male, age 53, unknown 22.2
2665 Male, age 74, both hemispheres 20.7
Superior colliculus
nTPM: 26.2
1895 Male, age 76, right hemisphere 31.5
2668 Female, age 75, unknown 29.6
1913 Female, age 42, unknown 28.8
1995 Male, age 72, unknown 27.4
1839 Male, age 51, unknown 26.6
2087 Female, age 72, unknown 24.8
2587 Male, age 74, left hemisphere 24.3
1796 Male, age 53, unknown 24.1
2261 Male, age 18, unknown 23.2
2664 Male, age 75, both hemispheres 21.7
Ventral tegmental area
nTPM: 25.3
2410 Female, age 72, unknown 27.6
2223 Female, age 72, unknown 25.8
2218 Male, age 76, both hemispheres 25.5
2021 Male, age 53, unknown 25.2
1942 Male, age 51, unknown 24.4
1915 Female, age 42, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.9
Samples: 139

Max nTPM: 11.4
Min nTPM: 2.4
Std nTPM: 1.4
Median nTPM: 4.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 8.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 8.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 8.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 7.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 7.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 7.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.3
Min nTPM: 8.1
Sample A Female 14.2
Sample B Female 13.0
Sample C Male 14.3
Sample D Male 8.1
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 14.6
Sample C Male 15.3
Sample D Male 12.7
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 15.2
Min nTPM: 11.9
Sample B Female 13.3
Sample C Male 15.2
Sample D Male 11.9
Superior colliculi
nTPM: 14.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.0
Sample A Female 15.0
Sample B Female 14.7
Sample C Male 15.2
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.3
Min nTPM: 8.0
Sample A Male 8.3
Sample B Male 8.2
Sample C Female 8.0
Sample D Female 8.3

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