MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:30.0 nTPM
GTEx:6.4 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:41.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2019 Male, age 18, unknown 30.5
1830 Male, age 51, unknown 29.1
1833 Male, age 53, unknown 27.9
1870 Female, age 42, unknown 26.1
2666 Male, age 74, left hemisphere 26.1
2219 Male, age 76, both hemispheres 24.0
2411 Female, age 72, unknown 23.2
1827 Male, age 72, unknown 22.7
2828 Female, age 72, unknown 22.1
2586 Male, age 75, left hemisphere 21.2
Dorsal raphe nucleus
nTPM: 24.2
2016 Female, age 72, unknown 28.6
2750 Male, age 76, both hemispheres 25.7
1828 Male, age 53, unknown 25.3
2047 Male, age 72, unknown 20.9
2298 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 25.0
2849 Male, age 72, unknown 29.7
1890 Male, age 53, unknown 26.7
1848 Female, age 42, unknown 24.1
2097 Female, age 72, unknown 19.6
Median raphe nucleus
nTPM: 24.9
2220 Male, age 76, midline 24.9
Periaquaductal grey, anterior
nTPM: 22.4
2502 Female, age 75, unknown 23.3
1947 Male, age 18, unknown 22.6
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 27.2
2850 Male, age 76, both hemispheres 36.0
1831 Male, age 72, unknown 25.5
2464 Female, age 72, unknown 24.1
1840 Male, age 53, unknown 23.1
Periaquaductal grey, lateral
nTPM: 30.0
2272 Male, age 74, both hemispheres 33.7
2140 Male, age 76, both hemispheres 32.8
2053 Male, age 18, unknown 23.7
Pretectal area
nTPM: 25.0
2273 Male, age 74, both hemispheres 32.8
2407 Male, age 75, both hemispheres 30.1
2007 Male, age 72, unknown 26.1
2825 Male, age 18, unknown 25.3
1815 Male, age 53, unknown 24.3
1817 Female, age 42, unknown 24.0
2224 Female, age 72, unknown 23.8
1816 Male, age 51, unknown 22.5
2667 Female, age 75, unknown 22.3
1944 Female, age 72, unknown 22.2
2316 Male, age 76, right hemisphere 21.2
Red nucleus
nTPM: 27.9
1865 Male, age 51, unknown 33.5
1904 Male, age 53, unknown 30.4
2588 Male, age 74, left hemisphere 29.8
2769 Male, age 72, unknown 29.0
2785 Male, age 18, unknown 28.2
2227 Male, age 72, unknown 27.7
1954 Female, age 42, unknown 27.4
2584 Male, age 75, left hemisphere 26.6
2823 Male, age 76, right hemisphere 26.2
1821 Female, age 72, unknown 26.0
2503 Female, age 72, unknown 25.5
2725 Female, age 75, unknown 24.4
Substantia nigra
nTPM: 22.4
2409 Female, age 72, unknown 27.9
1941 Male, age 53, unknown 25.3
2583 Male, age 75, right hemisphere 24.6
2590 Female, age 75, unknown 24.4
1889 Female, age 72, unknown 22.5
2699 Male, age 18, unknown 21.4
2665 Male, age 74, both hemispheres 21.2
1851 Male, age 51, unknown 20.0
2241 Male, age 72, unknown 19.1
1916 Female, age 42, unknown 17.9
Superior colliculus
nTPM: 25.6
1995 Male, age 72, unknown 30.0
2668 Female, age 75, unknown 28.3
2587 Male, age 74, left hemisphere 28.2
1913 Female, age 42, unknown 26.6
2261 Male, age 18, unknown 26.1
1895 Male, age 76, right hemisphere 25.9
1839 Male, age 51, unknown 24.7
2087 Female, age 72, unknown 23.1
2664 Male, age 75, both hemispheres 22.0
1796 Male, age 53, unknown 21.4
Ventral tegmental area
nTPM: 26.3
2223 Female, age 72, unknown 38.4
2218 Male, age 76, both hemispheres 26.8
1942 Male, age 51, unknown 24.5
2410 Female, age 72, unknown 23.3
2021 Male, age 53, unknown 23.1
1915 Female, age 42, unknown 21.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 12.5
Min nTPM: 3.1
Std nTPM: 1.8
Median nTPM: 6.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 11.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 11.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 10.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 10.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 10.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 9.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 9.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 9.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 40.4
Min nTPM: 22.2
Sample A Female 30.2
Sample B Female 22.2
Sample C Male 27.3
Sample D Male 40.4
Midbrain
nTPM: 38.5
Samples: 4

Max nTPM: 46.3
Min nTPM: 35.2
Sample A Female 35.2
Sample B Female 37.0
Sample C Male 46.3
Sample D Male 35.3
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 35.7
Min nTPM: 30.8
Sample B Female 35.7
Sample C Male 30.8
Sample D Male 31.8
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 45.0
Min nTPM: 35.5
Sample A Female 35.5
Sample B Female 45.0
Sample C Male 44.9
Sample D Male 41.9

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