HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:46.8 nTPM
HPA Brain:65.2 nTPM
GTEx:46.8 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:77.9 nTPM
Mouse:59.7 nTPM
Allen mouse:9.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029003Antibody HPA075941
Glial cells Not detectedMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 65.2
Sample id Sample description nTPM
Hippocampus
nTPM: 48.4
2621 Female, age 67, right hemisphere 62.1
1898 Male, age 80, left hemisphere 56.0
1911 Female, age 85, right hemisphere 48.4
2148 Female, age 91, left hemisphere 47.8
2529 Female, age 94, left hemisphere 42.4
1855 Male, age 76, left hemisphere 33.7
Dentate gyrus
nTPM: 48.7
1927 Female, age 91, both hemispheres 80.0
2531 Female, age 67, both hemispheres 65.8
2530 Female, age 94, left hemisphere 42.3
2528 Male, age 74, both hemispheres 38.2
2246 Female, age 85, both hemispheres 34.3
2010 Male, age 76, both hemispheres 31.6
Entorhinal gyrus
nTPM: 65.2
2613 Female, age 94, left hemisphere 98.5
2764 Male, age 80, right hemisphere 72.6
1938 Female, age 85, left hemisphere 70.5
2686 Male, age 75, right hemisphere 58.3
1787 Male, age 76, left hemisphere 53.4
2117 Female, age 91, right hemisphere 38.1
Hippocampus, CA1
nTPM: 53.9
2749 Male, age 80, left hemisphere 87.5
2527 Male, age 74, both hemispheres 63.7
1873 Female, age 85, both hemispheres 50.6
2045 Male, age 76, both hemispheres 41.7
2082 Female, age 91, right hemisphere 26.1
Hippocampus, CA2
nTPM: 46.0
2437 Female, age 94, left hemisphere 72.1
1892 Male, age 76, both hemispheres 63.5
1963 Male, age 80, left hemisphere 52.5
2249 Male, age 74, both hemispheres 42.0
2113 Female, age 91, right hemisphere 33.1
1940 Female, age 85, left hemisphere 12.8
Hippocampus, CA3
nTPM: 62.8
2137 Male, age 80, left hemisphere 99.5
2620 Female, age 94, left hemisphere 62.7
2861 Female, age 67, both hemispheres 58.7
2436 Male, age 74, both hemispheres 58.1
1891 Female, age 85, both hemispheres 50.0
1867 Male, age 76, both hemispheres 47.8
Parahippocampal cortex
nTPM: 60.4
2245 Female, age 91, both hemispheres 83.4
1990 Female, age 91, right hemisphere 76.6
2693 Female, age 94, both hemispheres 71.8
2532 Female, age 72, left hemisphere 69.7
1850 Male, age 80, both hemispheres 66.8
1933 Female, age 85, both hemispheres 56.7
2692 Male, age 74, both hemispheres 50.6
2622 Female, age 67, right hemisphere 44.8
2250 Female, age 67, right hemisphere 43.1
2018 Male, age 76, both hemispheres 40.7
Perirhinal gyrus
nTPM: 64.3
1847 Female, age 91, left hemisphere 91.9
2848 Male, age 76, right hemisphere 63.4
1841 Female, age 85, right hemisphere 63.0
1794 Male, age 80, right hemisphere 52.0
2521 Female, age 94, right hemisphere 51.0
Subiculum
nTPM: 51.7
2438 Female, age 94, left hemisphere 72.5
1977 Female, age 85, both hemispheres 64.9
2619 Male, age 74, both hemispheres 57.2
1901 Male, age 80, both hemispheres 57.0
2042 Male, age 76, both hemispheres 32.6
2729 Female, age 91, right hemisphere 26.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.8
Samples: 197

Max nTPM: 189.7
Min nTPM: 1.9
Std nTPM: 29.5
Median nTPM: 43.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 189.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 160.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 138.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 118.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 114.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 111.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 107.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 107.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 101.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 100.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 98.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 137.0
FF:10169-103B7 60 years, female 157.8
FF:10153-102I9 76 years, female 116.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 77.9
Pig sample Sample description nTPM
Subiculum
nTPM: 62.3
Samples: 4

Max nTPM: 90.1
Min nTPM: 48.8
Sample A Female 90.1
Sample B Female 49.3
Sample C Male 60.9
Sample D Male 48.8
Dorsal hippocampus
nTPM: 77.9
Samples: 4

Max nTPM: 90.1
Min nTPM: 62.7
Sample A Female 90.1
Sample B Female 82.9
Sample C Male 62.7
Sample D Male 75.7
Entorhinal cortex
nTPM: 67.2
Samples: 4

Max nTPM: 78.8
Min nTPM: 56.4
Sample A Female 67.9
Sample B Female 56.4
Sample C Male 65.8
Sample D Male 78.8
Ventral hippocampus
nTPM: 65.5
Samples: 4

Max nTPM: 102.3
Min nTPM: 46.5
Sample A Female 46.5
Sample B Female 49.2
Sample C Male 64.0
Sample D Male 102.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 59.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.7
Samples: 4

Max nTPM: 65.8
Min nTPM: 53.0
Sample A Male 56.6
Sample B Male 63.2
Sample C Female 53.0
Sample D Female 65.8
Hippocampal formation
nTPM: 58.4
Samples: 4

Max nTPM: 63.9
Min nTPM: 53.4
Sample A Male 53.4
Sample B Male 61.3
Sample C Female 63.9
Sample D Female 54.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.5
71836837 Antisense, RP_051017_02_B12, Mouse strain C57BL/6J (56 days, male) 13.0
67978774 Antisense, RP_040923_01_H04, Mouse strain C57BL/6J (56 days, male) 7.8
77910643 Antisense, RP_070208_04_E04, Mouse strain C57BL/6J (56 days, male) 7.8

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