HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.7 nTPM
HPA Brain:96.4 nTPM
GTEx:24.7 nTPM
FANTOM5:188.7 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:84.9 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 96.4
Sample id Sample description nTPM
Hippocampus
nTPM: 96.4
1898 Male, age 80, left hemisphere 129.8
1855 Male, age 76, left hemisphere 106.7
2148 Female, age 91, left hemisphere 103.3
1911 Female, age 85, right hemisphere 88.6
2529 Female, age 94, left hemisphere 78.5
2621 Female, age 67, right hemisphere 71.7
Dentate gyrus
nTPM: 89.2
2530 Female, age 94, left hemisphere 121.1
2528 Male, age 74, both hemispheres 102.3
1927 Female, age 91, both hemispheres 101.7
2010 Male, age 76, both hemispheres 87.2
2246 Female, age 85, both hemispheres 72.5
2531 Female, age 67, both hemispheres 50.2
Entorhinal gyrus
nTPM: 57.9
2117 Female, age 91, right hemisphere 95.6
1938 Female, age 85, left hemisphere 63.5
2686 Male, age 75, right hemisphere 51.9
1787 Male, age 76, left hemisphere 49.2
2613 Female, age 94, left hemisphere 47.8
2764 Male, age 80, right hemisphere 39.1
Hippocampus, CA1
nTPM: 84.7
1873 Female, age 85, both hemispheres 136.1
2749 Male, age 80, left hemisphere 110.7
2527 Male, age 74, both hemispheres 65.1
2082 Female, age 91, right hemisphere 60.5
2045 Male, age 76, both hemispheres 50.9
Hippocampus, CA2
nTPM: 87.8
1963 Male, age 80, left hemisphere 141.0
1940 Female, age 85, left hemisphere 85.0
1892 Male, age 76, both hemispheres 83.6
2249 Male, age 74, both hemispheres 79.4
2113 Female, age 91, right hemisphere 71.3
2437 Female, age 94, left hemisphere 66.3
Hippocampus, CA3
nTPM: 65.2
1891 Female, age 85, both hemispheres 80.7
2861 Female, age 67, both hemispheres 75.0
2620 Female, age 94, left hemisphere 67.9
2137 Male, age 80, left hemisphere 61.4
1867 Male, age 76, both hemispheres 55.8
2436 Male, age 74, both hemispheres 50.7
Parahippocampal cortex
nTPM: 50.4
1990 Female, age 91, right hemisphere 59.5
1850 Male, age 80, both hemispheres 54.9
2692 Male, age 74, both hemispheres 54.9
1933 Female, age 85, both hemispheres 54.5
2245 Female, age 91, both hemispheres 52.9
2018 Male, age 76, both hemispheres 50.3
2250 Female, age 67, right hemisphere 47.6
2693 Female, age 94, both hemispheres 45.7
2622 Female, age 67, right hemisphere 43.2
2532 Female, age 72, left hemisphere 40.4
Perirhinal gyrus
nTPM: 45.7
1841 Female, age 85, right hemisphere 52.2
2848 Male, age 76, right hemisphere 47.1
1847 Female, age 91, left hemisphere 45.6
1794 Male, age 80, right hemisphere 43.8
2521 Female, age 94, right hemisphere 39.8
Subiculum
nTPM: 67.6
2729 Female, age 91, right hemisphere 112.1
1901 Male, age 80, both hemispheres 66.5
2042 Male, age 76, both hemispheres 65.0
2438 Female, age 94, left hemisphere 62.9
1977 Female, age 85, both hemispheres 50.2
2619 Male, age 74, both hemispheres 49.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.7
Samples: 197

Max nTPM: 68.8
Min nTPM: 7.2
Std nTPM: 9.8
Median nTPM: 22.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 68.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 55.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 49.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 47.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 45.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 45.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 44.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 43.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 43.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 43.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 42.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 188.7
FF:10153-102I9 76 years, female 236.1
FF:10169-103B7 60 years, female 141.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.6
Pig sample Sample description nTPM
Subiculum
nTPM: 31.3
Samples: 4

Max nTPM: 37.7
Min nTPM: 26.6
Sample A Female 37.7
Sample B Female 28.6
Sample C Male 32.4
Sample D Male 26.6
Dorsal hippocampus
nTPM: 49.6
Samples: 4

Max nTPM: 59.4
Min nTPM: 35.6
Sample A Female 54.4
Sample B Female 59.4
Sample C Male 35.6
Sample D Male 48.9
Entorhinal cortex
nTPM: 26.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 26.3
Sample C Male 27.9
Sample D Male 26.2
Ventral hippocampus
nTPM: 45.7
Samples: 4

Max nTPM: 56.2
Min nTPM: 39.6
Sample A Female 56.2
Sample B Female 39.6
Sample C Male 40.1
Sample D Male 46.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 84.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.1
Samples: 4

Max nTPM: 70.3
Min nTPM: 61.9
Sample A Male 61.9
Sample B Male 64.0
Sample C Female 64.3
Sample D Female 70.3
Hippocampal formation
nTPM: 84.9
Samples: 4

Max nTPM: 102.3
Min nTPM: 70.8
Sample A Male 78.0
Sample B Male 88.4
Sample C Female 102.3
Sample D Female 70.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
73818756 Antisense, RP_050921_02_B08, Mouse strain C57BL/6J (56 days, male) 6.5
71763534 Antisense, RP_050921_02_B08, Mouse strain C57BL/6J (56 days, male) 4.3

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