MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.5 nTPM
HPA Brain:43.5 nTPM
GTEx:18.5 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:15.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
1833 Male, age 53, unknown 58.7
1830 Male, age 51, unknown 50.8
2411 Female, age 72, unknown 45.5
1870 Female, age 42, unknown 44.1
2019 Male, age 18, unknown 41.6
2666 Male, age 74, left hemisphere 40.1
1827 Male, age 72, unknown 32.6
2586 Male, age 75, left hemisphere 32.2
2828 Female, age 72, unknown 31.7
2219 Male, age 76, both hemispheres 22.6
Dorsal raphe nucleus
nTPM: 31.4
2750 Male, age 76, both hemispheres 38.1
1828 Male, age 53, unknown 34.3
2016 Female, age 72, unknown 32.8
2047 Male, age 72, unknown 27.5
2298 Female, age 72, unknown 24.1
Inferior colliculus
nTPM: 27.3
2849 Male, age 72, unknown 29.5
1848 Female, age 42, unknown 29.1
2097 Female, age 72, unknown 25.5
1890 Male, age 53, unknown 25.2
Median raphe nucleus
nTPM: 35.1
2220 Male, age 76, midline 35.1
Periaquaductal grey, anterior
nTPM: 29.1
2502 Female, age 75, unknown 34.3
1947 Male, age 18, unknown 33.2
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 27.0
2464 Female, age 72, unknown 32.2
2850 Male, age 76, both hemispheres 29.8
1831 Male, age 72, unknown 28.3
1840 Male, age 53, unknown 17.5
Periaquaductal grey, lateral
nTPM: 30.0
2053 Male, age 18, unknown 32.4
2272 Male, age 74, both hemispheres 30.8
2140 Male, age 76, both hemispheres 26.7
Pretectal area
nTPM: 30.4
1815 Male, age 53, unknown 39.2
2667 Female, age 75, unknown 35.3
2407 Male, age 75, both hemispheres 33.7
2825 Male, age 18, unknown 32.1
2007 Male, age 72, unknown 31.5
1817 Female, age 42, unknown 30.4
2316 Male, age 76, right hemisphere 30.3
2224 Female, age 72, unknown 29.7
2273 Male, age 74, both hemispheres 25.2
1944 Female, age 72, unknown 24.7
1816 Male, age 51, unknown 22.1
Red nucleus
nTPM: 43.5
1904 Male, age 53, unknown 54.6
1821 Female, age 72, unknown 51.3
1865 Male, age 51, unknown 51.1
1954 Female, age 42, unknown 51.0
2503 Female, age 72, unknown 44.5
2785 Male, age 18, unknown 41.5
2769 Male, age 72, unknown 40.9
2227 Male, age 72, unknown 40.5
2588 Male, age 74, left hemisphere 40.2
2584 Male, age 75, left hemisphere 38.6
2823 Male, age 76, right hemisphere 37.1
2725 Female, age 75, unknown 31.1
Substantia nigra
nTPM: 31.7
2409 Female, age 72, unknown 37.9
2241 Male, age 72, unknown 35.6
2699 Male, age 18, unknown 35.5
2583 Male, age 75, right hemisphere 34.2
1916 Female, age 42, unknown 31.4
1851 Male, age 51, unknown 31.2
1889 Female, age 72, unknown 29.9
2590 Female, age 75, unknown 27.8
1941 Male, age 53, unknown 27.4
2665 Male, age 74, both hemispheres 26.2
Superior colliculus
nTPM: 33.3
1913 Female, age 42, unknown 51.4
1839 Male, age 51, unknown 47.2
1895 Male, age 76, right hemisphere 37.1
2668 Female, age 75, unknown 35.1
1995 Male, age 72, unknown 34.8
2587 Male, age 74, left hemisphere 32.0
1796 Male, age 53, unknown 27.4
2087 Female, age 72, unknown 24.7
2664 Male, age 75, both hemispheres 23.4
2261 Male, age 18, unknown 20.1
Ventral tegmental area
nTPM: 35.9
2410 Female, age 72, unknown 50.5
2218 Male, age 76, both hemispheres 47.5
2223 Female, age 72, unknown 32.9
1942 Male, age 51, unknown 29.2
1915 Female, age 42, unknown 28.4
2021 Male, age 53, unknown 26.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.5
Samples: 139

Max nTPM: 127.0
Min nTPM: 5.8
Std nTPM: 12.3
Median nTPM: 16.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 127.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 67.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 61.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 35.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 33.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 31.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 28.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 27.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.0
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.8
Sample A Female 18.8
Sample B Female 13.6
Sample C Male 12.8
Sample D Male 14.6
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 8.4
Sample A Female 18.5
Sample B Female 14.5
Sample C Male 8.4
Sample D Male 9.1
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 15.9
Min nTPM: 13.6
Sample B Female 13.6
Sample C Male 15.9
Sample D Male 13.6
Superior colliculi
nTPM: 12.9
Samples: 4

Max nTPM: 17.4
Min nTPM: 8.9
Sample A Female 13.8
Sample B Female 11.3
Sample C Male 8.9
Sample D Male 17.4

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