MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:25.6 nTPM
GTEx:14.5 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:12.0 nTPM
Mouse:10.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
1870 Female, age 42, unknown 28.0
1830 Male, age 51, unknown 24.5
2019 Male, age 18, unknown 23.2
1833 Male, age 53, unknown 22.6
2411 Female, age 72, unknown 22.5
2666 Male, age 74, left hemisphere 18.1
2828 Female, age 72, unknown 16.5
2219 Male, age 76, both hemispheres 16.2
1827 Male, age 72, unknown 14.6
2586 Male, age 75, left hemisphere 13.2
Dorsal raphe nucleus
nTPM: 17.6
2750 Male, age 76, both hemispheres 25.7
1828 Male, age 53, unknown 19.6
2016 Female, age 72, unknown 16.0
2047 Male, age 72, unknown 13.6
2298 Female, age 72, unknown 13.2
Inferior colliculus
nTPM: 14.9
1848 Female, age 42, unknown 16.8
2849 Male, age 72, unknown 16.2
1890 Male, age 53, unknown 13.7
2097 Female, age 72, unknown 13.0
Median raphe nucleus
nTPM: 17.9
2220 Male, age 76, midline 17.9
Periaquaductal grey, anterior
nTPM: 15.1
2502 Female, age 75, unknown 18.4
1947 Male, age 18, unknown 13.7
1795 Male, age 51, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 14.1
2464 Female, age 72, unknown 16.8
1831 Male, age 72, unknown 15.3
2850 Male, age 76, both hemispheres 14.4
1840 Male, age 53, unknown 10.1
Periaquaductal grey, lateral
nTPM: 15.7
2053 Male, age 18, unknown 16.7
2140 Male, age 76, both hemispheres 15.7
2272 Male, age 74, both hemispheres 14.6
Pretectal area
nTPM: 15.9
1815 Male, age 53, unknown 23.8
2316 Male, age 76, right hemisphere 18.1
1817 Female, age 42, unknown 17.1
2825 Male, age 18, unknown 16.3
2224 Female, age 72, unknown 16.0
2407 Male, age 75, both hemispheres 16.0
2667 Female, age 75, unknown 15.4
2007 Male, age 72, unknown 14.8
2273 Male, age 74, both hemispheres 13.6
1944 Female, age 72, unknown 12.4
1816 Male, age 51, unknown 11.7
Red nucleus
nTPM: 25.6
1954 Female, age 42, unknown 35.1
1865 Male, age 51, unknown 29.3
2227 Male, age 72, unknown 28.3
1904 Male, age 53, unknown 28.0
2769 Male, age 72, unknown 27.5
1821 Female, age 72, unknown 26.9
2823 Male, age 76, right hemisphere 25.4
2503 Female, age 72, unknown 24.6
2588 Male, age 74, left hemisphere 22.4
2785 Male, age 18, unknown 22.4
2725 Female, age 75, unknown 19.6
2584 Male, age 75, left hemisphere 17.9
Substantia nigra
nTPM: 17.2
2409 Female, age 72, unknown 21.7
2699 Male, age 18, unknown 18.7
1851 Male, age 51, unknown 17.6
2590 Female, age 75, unknown 17.6
2583 Male, age 75, right hemisphere 17.2
2241 Male, age 72, unknown 17.0
1941 Male, age 53, unknown 16.9
1889 Female, age 72, unknown 16.3
2665 Male, age 74, both hemispheres 14.6
1916 Female, age 42, unknown 14.0
Superior colliculus
nTPM: 17.1
1913 Female, age 42, unknown 22.8
1895 Male, age 76, right hemisphere 21.3
1995 Male, age 72, unknown 20.1
2587 Male, age 74, left hemisphere 19.3
1839 Male, age 51, unknown 18.5
2668 Female, age 75, unknown 17.2
2261 Male, age 18, unknown 14.0
2087 Female, age 72, unknown 13.5
1796 Male, age 53, unknown 13.0
2664 Male, age 75, both hemispheres 11.1
Ventral tegmental area
nTPM: 19.5
2223 Female, age 72, unknown 25.4
2218 Male, age 76, both hemispheres 22.4
2410 Female, age 72, unknown 19.8
1942 Male, age 51, unknown 17.3
2021 Male, age 53, unknown 16.2
1915 Female, age 42, unknown 16.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.5
Samples: 139

Max nTPM: 54.5
Min nTPM: 4.6
Std nTPM: 7.5
Median nTPM: 13.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 54.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 32.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 30.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 24.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.4
FF:10158-103A5 76 years, female 47.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.4
Sample A Female 11.5
Sample B Female 12.9
Sample C Male 12.3
Sample D Male 11.4
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 12.3
Sample C Male 8.9
Sample D Male 11.7
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 11.4
Min nTPM: 11.0
Sample B Female 11.0
Sample C Male 11.2
Sample D Male 11.4
Superior colliculi
nTPM: 10.0
Samples: 4

Max nTPM: 12.3
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 10.0
Sample C Male 10.0
Sample D Male 12.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.6
Sample A Male 9.9
Sample B Male 10.8
Sample C Female 11.7
Sample D Female 8.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70431379 Antisense, RP_050614_02_G01, Mouse strain C57BL/6J (56 days, male) 0.1
74988457 Antisense, RP_060315_05_D12, Mouse strain C57BL/6J (56 days, male) 0.1

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