MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.0 nTPM
HPA Brain:92.3 nTPM
GTEx:73.0 nTPM
FANTOM5:130.2 Scaled Tags Per Million
Pig:56.9 nTPM
Mouse:51.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.6
1830 Male, age 51, unknown 94.3
2586 Male, age 75, left hemisphere 93.1
1833 Male, age 53, unknown 92.3
2828 Female, age 72, unknown 92.3
1870 Female, age 42, unknown 91.4
2411 Female, age 72, unknown 82.1
2019 Male, age 18, unknown 79.9
2219 Male, age 76, both hemispheres 71.6
1827 Male, age 72, unknown 70.8
2666 Male, age 74, left hemisphere 68.4
Dorsal raphe nucleus
nTPM: 81.2
2750 Male, age 76, both hemispheres 93.9
2016 Female, age 72, unknown 92.0
2047 Male, age 72, unknown 78.9
1828 Male, age 53, unknown 77.1
2298 Female, age 72, unknown 64.1
Inferior colliculus
nTPM: 80.1
2849 Male, age 72, unknown 91.9
1848 Female, age 42, unknown 84.1
1890 Male, age 53, unknown 74.3
2097 Female, age 72, unknown 70.2
Median raphe nucleus
nTPM: 81.7
2220 Male, age 76, midline 81.7
Periaquaductal grey, anterior
nTPM: 79.2
2502 Female, age 75, unknown 91.5
1947 Male, age 18, unknown 76.1
1795 Male, age 51, unknown 70.0
Periaquaductal grey, dorsal
nTPM: 81.3
2850 Male, age 76, both hemispheres 89.8
1840 Male, age 53, unknown 87.2
1831 Male, age 72, unknown 75.1
2464 Female, age 72, unknown 73.3
Periaquaductal grey, lateral
nTPM: 82.6
2140 Male, age 76, both hemispheres 89.9
2053 Male, age 18, unknown 81.7
2272 Male, age 74, both hemispheres 76.3
Pretectal area
nTPM: 82.3
1817 Female, age 42, unknown 95.1
1815 Male, age 53, unknown 91.7
2407 Male, age 75, both hemispheres 90.2
1944 Female, age 72, unknown 87.7
2273 Male, age 74, both hemispheres 85.7
2316 Male, age 76, right hemisphere 83.9
2667 Female, age 75, unknown 80.4
2825 Male, age 18, unknown 78.3
2007 Male, age 72, unknown 74.3
2224 Female, age 72, unknown 70.7
1816 Male, age 51, unknown 67.6
Red nucleus
nTPM: 92.3
1865 Male, age 51, unknown 105.0
2769 Male, age 72, unknown 101.2
1904 Male, age 53, unknown 99.2
1821 Female, age 72, unknown 96.1
2785 Male, age 18, unknown 95.8
2227 Male, age 72, unknown 94.5
2503 Female, age 72, unknown 93.8
1954 Female, age 42, unknown 92.7
2823 Male, age 76, right hemisphere 89.2
2588 Male, age 74, left hemisphere 85.2
2584 Male, age 75, left hemisphere 79.0
2725 Female, age 75, unknown 76.1
Substantia nigra
nTPM: 74.6
2699 Male, age 18, unknown 97.8
1889 Female, age 72, unknown 88.2
2409 Female, age 72, unknown 81.1
2583 Male, age 75, right hemisphere 76.8
1851 Male, age 51, unknown 75.1
2590 Female, age 75, unknown 72.8
1916 Female, age 42, unknown 64.3
2241 Male, age 72, unknown 63.5
2665 Male, age 74, both hemispheres 63.4
1941 Male, age 53, unknown 63.1
Superior colliculus
nTPM: 84.0
1995 Male, age 72, unknown 105.1
1913 Female, age 42, unknown 103.8
2668 Female, age 75, unknown 89.3
2587 Male, age 74, left hemisphere 87.0
1839 Male, age 51, unknown 81.6
1895 Male, age 76, right hemisphere 81.6
2664 Male, age 75, both hemispheres 76.5
1796 Male, age 53, unknown 75.4
2087 Female, age 72, unknown 71.6
2261 Male, age 18, unknown 68.4
Ventral tegmental area
nTPM: 79.0
2223 Female, age 72, unknown 89.3
2410 Female, age 72, unknown 84.7
1942 Male, age 51, unknown 82.6
2021 Male, age 53, unknown 78.6
1915 Female, age 42, unknown 72.0
2218 Male, age 76, both hemispheres 66.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.0
Samples: 139

Max nTPM: 169.6
Min nTPM: 30.2
Std nTPM: 23.1
Median nTPM: 70.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 169.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 125.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 124.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 119.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 118.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 113.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 113.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 112.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 108.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 108.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 107.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.2
FF:10158-103A5 76 years, female 130.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.6
Samples: 4

Max nTPM: 50.9
Min nTPM: 41.4
Sample A Female 48.0
Sample B Female 50.9
Sample C Male 41.4
Sample D Male 50.0
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 71.1
Min nTPM: 51.1
Sample A Female 71.1
Sample B Female 51.1
Sample C Male 53.5
Sample D Male 52.1
Periaqueductal gray
nTPM: 51.3
Samples: 3

Max nTPM: 51.9
Min nTPM: 50.8
Sample B Female 51.9
Sample C Male 50.8
Sample D Male 51.1
Superior colliculi
nTPM: 54.3
Samples: 4

Max nTPM: 62.3
Min nTPM: 51.1
Sample A Female 62.3
Sample B Female 52.3
Sample C Male 51.1
Sample D Male 51.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 55.1
Min nTPM: 48.8
Sample A Male 51.7
Sample B Male 48.8
Sample C Female 55.1
Sample D Female 50.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69837932 Antisense, RP_050224_01_B11, Mouse strain C57BL/6J (56 days, male) 1.6
74819343 Antisense, RP_060315_02_E10, Mouse strain C57BL/6J (56 days, male) 1.2

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