MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.9 nTPM
HPA Brain:9.6 nTPM
GTEx:1.9 nTPM
FANTOM5:6.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.3
2019 Male, age 18, unknown 10.0
1827 Male, age 72, unknown 7.9
2586 Male, age 75, left hemisphere 7.5
2828 Female, age 72, unknown 6.4
2666 Male, age 74, left hemisphere 5.6
1833 Male, age 53, unknown 5.5
2219 Male, age 76, both hemispheres 5.4
1870 Female, age 42, unknown 5.2
1830 Male, age 51, unknown 4.9
2411 Female, age 72, unknown 4.5
Dorsal raphe nucleus
nTPM: 4.9
2750 Male, age 76, both hemispheres 5.8
2298 Female, age 72, unknown 4.9
1828 Male, age 53, unknown 4.8
2016 Female, age 72, unknown 4.6
2047 Male, age 72, unknown 4.2
Inferior colliculus
nTPM: 6.0
2097 Female, age 72, unknown 7.7
1848 Female, age 42, unknown 5.7
1890 Male, age 53, unknown 5.4
2849 Male, age 72, unknown 5.3
Median raphe nucleus
nTPM: 4.5
2220 Male, age 76, midline 4.5
Periaquaductal grey, anterior
nTPM: 7.8
1795 Male, age 51, unknown 8.7
1947 Male, age 18, unknown 7.4
2502 Female, age 75, unknown 7.2
Periaquaductal grey, dorsal
nTPM: 6.0
1831 Male, age 72, unknown 6.9
2850 Male, age 76, both hemispheres 6.8
1840 Male, age 53, unknown 5.3
2464 Female, age 72, unknown 5.0
Periaquaductal grey, lateral
nTPM: 6.6
2272 Male, age 74, both hemispheres 7.6
2140 Male, age 76, both hemispheres 6.4
2053 Male, age 18, unknown 5.7
Pretectal area
nTPM: 9.6
1816 Male, age 51, unknown 15.2
2007 Male, age 72, unknown 13.2
1817 Female, age 42, unknown 12.6
1944 Female, age 72, unknown 10.7
1815 Male, age 53, unknown 10.4
2273 Male, age 74, both hemispheres 9.7
2667 Female, age 75, unknown 9.5
2316 Male, age 76, right hemisphere 7.7
2407 Male, age 75, both hemispheres 6.6
2224 Female, age 72, unknown 5.6
2825 Male, age 18, unknown 4.7
Red nucleus
nTPM: 5.4
2785 Male, age 18, unknown 9.9
2823 Male, age 76, right hemisphere 5.6
2588 Male, age 74, left hemisphere 5.5
2725 Female, age 75, unknown 5.3
1904 Male, age 53, unknown 5.0
1954 Female, age 42, unknown 5.0
2503 Female, age 72, unknown 5.0
2584 Male, age 75, left hemisphere 5.0
1821 Female, age 72, unknown 4.7
1865 Male, age 51, unknown 4.7
2227 Male, age 72, unknown 4.4
2769 Male, age 72, unknown 4.4
Substantia nigra
nTPM: 4.3
1889 Female, age 72, unknown 8.8
2583 Male, age 75, right hemisphere 5.1
1941 Male, age 53, unknown 4.8
2590 Female, age 75, unknown 4.6
1851 Male, age 51, unknown 3.7
2665 Male, age 74, both hemispheres 3.6
1916 Female, age 42, unknown 3.4
2241 Male, age 72, unknown 3.3
2409 Female, age 72, unknown 3.1
2699 Male, age 18, unknown 2.2
Superior colliculus
nTPM: 7.2
2087 Female, age 72, unknown 10.2
2261 Male, age 18, unknown 8.8
2664 Male, age 75, both hemispheres 7.5
1796 Male, age 53, unknown 7.0
1913 Female, age 42, unknown 7.0
1995 Male, age 72, unknown 7.0
1895 Male, age 76, right hemisphere 6.9
2668 Female, age 75, unknown 6.5
2587 Male, age 74, left hemisphere 6.3
1839 Male, age 51, unknown 5.1
Ventral tegmental area
nTPM: 5.0
2021 Male, age 53, unknown 5.6
1942 Male, age 51, unknown 5.3
2223 Female, age 72, unknown 5.2
2218 Male, age 76, both hemispheres 5.0
2410 Female, age 72, unknown 4.5
1915 Female, age 42, unknown 4.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.9
Samples: 139

Max nTPM: 4.2
Min nTPM: 0.7
Std nTPM: 0.6
Median nTPM: 1.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 3.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 3.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 3.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 3.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 3.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 3.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 3.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.1
FF:10158-103A5 76 years, female 6.1

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