MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:112.7 nTPM
HPA Brain:100.1 nTPM
GTEx:112.7 nTPM
FANTOM5:85.3 Scaled Tags Per Million
Pig:82.3 nTPM
Mouse:200.9 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.7
2411 Female, age 72, unknown 96.5
2019 Male, age 18, unknown 96.3
1827 Male, age 72, unknown 89.0
1870 Female, age 42, unknown 88.3
2666 Male, age 74, left hemisphere 84.3
2219 Male, age 76, both hemispheres 80.9
1833 Male, age 53, unknown 75.9
1830 Male, age 51, unknown 73.7
2586 Male, age 75, left hemisphere 71.7
2828 Female, age 72, unknown 70.0
Dorsal raphe nucleus
nTPM: 90.2
2298 Female, age 72, unknown 101.1
2047 Male, age 72, unknown 99.8
2750 Male, age 76, both hemispheres 92.4
1828 Male, age 53, unknown 80.8
2016 Female, age 72, unknown 76.9
Inferior colliculus
nTPM: 78.8
2097 Female, age 72, unknown 87.2
1890 Male, age 53, unknown 81.3
1848 Female, age 42, unknown 77.3
2849 Male, age 72, unknown 69.4
Median raphe nucleus
nTPM: 100.1
2220 Male, age 76, midline 100.1
Periaquaductal grey, anterior
nTPM: 87.2
1947 Male, age 18, unknown 91.8
2502 Female, age 75, unknown 89.5
1795 Male, age 51, unknown 80.2
Periaquaductal grey, dorsal
nTPM: 75.1
1840 Male, age 53, unknown 82.4
2464 Female, age 72, unknown 74.9
2850 Male, age 76, both hemispheres 71.7
1831 Male, age 72, unknown 71.3
Periaquaductal grey, lateral
nTPM: 72.2
2272 Male, age 74, both hemispheres 75.9
2053 Male, age 18, unknown 72.8
2140 Male, age 76, both hemispheres 67.8
Pretectal area
nTPM: 86.9
1816 Male, age 51, unknown 107.7
2007 Male, age 72, unknown 106.2
1817 Female, age 42, unknown 99.5
1944 Female, age 72, unknown 93.2
1815 Male, age 53, unknown 91.2
2224 Female, age 72, unknown 85.2
2407 Male, age 75, both hemispheres 80.5
2825 Male, age 18, unknown 75.7
2273 Male, age 74, both hemispheres 74.2
2667 Female, age 75, unknown 73.3
2316 Male, age 76, right hemisphere 69.6
Red nucleus
nTPM: 83.2
1821 Female, age 72, unknown 98.6
2588 Male, age 74, left hemisphere 96.9
2725 Female, age 75, unknown 95.7
2503 Female, age 72, unknown 88.3
2785 Male, age 18, unknown 86.5
1865 Male, age 51, unknown 82.4
1954 Female, age 42, unknown 80.5
1904 Male, age 53, unknown 79.7
2584 Male, age 75, left hemisphere 73.8
2769 Male, age 72, unknown 73.5
2823 Male, age 76, right hemisphere 72.1
2227 Male, age 72, unknown 70.8
Substantia nigra
nTPM: 96.0
2241 Male, age 72, unknown 114.3
1916 Female, age 42, unknown 110.0
1851 Male, age 51, unknown 107.9
1889 Female, age 72, unknown 100.1
1941 Male, age 53, unknown 96.3
2665 Male, age 74, both hemispheres 93.9
2409 Female, age 72, unknown 93.0
2590 Female, age 75, unknown 91.8
2699 Male, age 18, unknown 79.8
2583 Male, age 75, right hemisphere 72.9
Superior colliculus
nTPM: 79.5
2587 Male, age 74, left hemisphere 94.4
2087 Female, age 72, unknown 88.1
1796 Male, age 53, unknown 84.2
2261 Male, age 18, unknown 82.1
2668 Female, age 75, unknown 80.8
1895 Male, age 76, right hemisphere 79.0
1913 Female, age 42, unknown 77.8
1839 Male, age 51, unknown 75.4
1995 Male, age 72, unknown 68.9
2664 Male, age 75, both hemispheres 64.2
Ventral tegmental area
nTPM: 87.6
2410 Female, age 72, unknown 103.6
1915 Female, age 42, unknown 91.0
2223 Female, age 72, unknown 87.7
2021 Male, age 53, unknown 83.6
2218 Male, age 76, both hemispheres 81.7
1942 Male, age 51, unknown 78.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.7
Samples: 139

Max nTPM: 337.0
Min nTPM: 66.9
Std nTPM: 38.0
Median nTPM: 103.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 337.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 265.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 254.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 219.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 197.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 197.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 184.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 180.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 176.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 175.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.3
FF:10158-103A5 76 years, female 85.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.9
Samples: 4

Max nTPM: 106.6
Min nTPM: 62.7
Sample A Female 106.6
Sample B Female 62.7
Sample C Male 92.5
Sample D Male 65.7
Midbrain
nTPM: 82.3
Samples: 4

Max nTPM: 104.2
Min nTPM: 68.4
Sample A Female 104.2
Sample B Female 68.4
Sample C Male 80.7
Sample D Male 75.9
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 80.7
Min nTPM: 62.6
Sample B Female 62.6
Sample C Male 80.7
Sample D Male 63.9
Superior colliculi
nTPM: 80.4
Samples: 4

Max nTPM: 90.2
Min nTPM: 66.0
Sample A Female 90.2
Sample B Female 66.0
Sample C Male 88.7
Sample D Male 76.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 200.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 200.9
Samples: 4

Max nTPM: 205.8
Min nTPM: 192.6
Sample A Male 203.6
Sample B Male 205.8
Sample C Female 201.6
Sample D Female 192.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68191552 Antisense, RP_041129_01_D07, Mouse strain C57BL/6J (56 days, male) 2.4

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