HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:38.8 nTPM
HPA Brain:14.1 nTPM
GTEx:38.8 nTPM
FANTOM5:103.8 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:48.8 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024648
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Hippocampus
nTPM: 12.8
1898 Male, age 80, left hemisphere 22.1
1855 Male, age 76, left hemisphere 14.8
2621 Female, age 67, right hemisphere 12.6
1911 Female, age 85, right hemisphere 12.1
2148 Female, age 91, left hemisphere 8.8
2529 Female, age 94, left hemisphere 6.7
Dentate gyrus
nTPM: 11.2
1927 Female, age 91, both hemispheres 15.7
2246 Female, age 85, both hemispheres 13.6
2530 Female, age 94, left hemisphere 11.0
2528 Male, age 74, both hemispheres 10.0
2010 Male, age 76, both hemispheres 9.4
2531 Female, age 67, both hemispheres 7.6
Entorhinal gyrus
nTPM: 11.6
1938 Female, age 85, left hemisphere 14.4
2613 Female, age 94, left hemisphere 12.9
2117 Female, age 91, right hemisphere 11.6
2764 Male, age 80, right hemisphere 11.0
2686 Male, age 75, right hemisphere 10.4
1787 Male, age 76, left hemisphere 9.5
Hippocampus, CA1
nTPM: 14.1
2749 Male, age 80, left hemisphere 19.0
1873 Female, age 85, both hemispheres 15.3
2527 Male, age 74, both hemispheres 14.0
2045 Male, age 76, both hemispheres 11.0
2082 Female, age 91, right hemisphere 10.9
Hippocampus, CA2
nTPM: 13.6
1892 Male, age 76, both hemispheres 18.3
1963 Male, age 80, left hemisphere 16.1
2249 Male, age 74, both hemispheres 13.5
2437 Female, age 94, left hemisphere 12.6
1940 Female, age 85, left hemisphere 11.4
2113 Female, age 91, right hemisphere 9.9
Hippocampus, CA3
nTPM: 11.7
2137 Male, age 80, left hemisphere 16.5
1867 Male, age 76, both hemispheres 13.8
1891 Female, age 85, both hemispheres 13.1
2436 Male, age 74, both hemispheres 12.4
2861 Female, age 67, both hemispheres 7.8
2620 Female, age 94, left hemisphere 6.6
Parahippocampal cortex
nTPM: 12.3
1850 Male, age 80, both hemispheres 16.8
1933 Female, age 85, both hemispheres 16.1
2245 Female, age 91, both hemispheres 14.6
2250 Female, age 67, right hemisphere 14.2
1990 Female, age 91, right hemisphere 12.4
2532 Female, age 72, left hemisphere 10.6
2622 Female, age 67, right hemisphere 9.8
2693 Female, age 94, both hemispheres 9.6
2692 Male, age 74, both hemispheres 9.3
2018 Male, age 76, both hemispheres 9.1
Perirhinal gyrus
nTPM: 14.1
1847 Female, age 91, left hemisphere 18.6
1794 Male, age 80, right hemisphere 15.8
1841 Female, age 85, right hemisphere 14.2
2521 Female, age 94, right hemisphere 10.9
2848 Male, age 76, right hemisphere 10.9
Subiculum
nTPM: 9.9
1901 Male, age 80, both hemispheres 15.2
1977 Female, age 85, both hemispheres 12.6
2042 Male, age 76, both hemispheres 10.0
2619 Male, age 74, both hemispheres 9.9
2729 Female, age 91, right hemisphere 9.3
2438 Female, age 94, left hemisphere 2.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.8
Samples: 197

Max nTPM: 95.9
Min nTPM: 15.9
Std nTPM: 10.6
Median nTPM: 37.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 95.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 74.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 69.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 65.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 63.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 58.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 58.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 57.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 57.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 57.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 57.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.8
FF:10169-103B7 60 years, female 133.9
FF:10153-102I9 76 years, female 73.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Subiculum
nTPM: 13.6
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.5
Sample A Female 16.1
Sample B Female 12.5
Sample C Male 12.6
Sample D Male 13.0
Dorsal hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.8
Sample A Female 15.9
Sample B Female 13.9
Sample C Male 14.0
Sample D Male 12.8
Entorhinal cortex
nTPM: 13.6
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.2
Sample A Female 13.3
Sample B Female 15.0
Sample C Male 13.7
Sample D Male 12.2
Ventral hippocampus
nTPM: 12.0
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.5
Sample A Female 12.5
Sample B Female 11.7
Sample C Male 11.5
Sample D Male 12.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.4
Samples: 4

Max nTPM: 51.3
Min nTPM: 37.9
Sample A Male 41.7
Sample B Male 51.3
Sample C Female 46.5
Sample D Female 37.9
Hippocampal formation
nTPM: 48.8
Samples: 4

Max nTPM: 52.1
Min nTPM: 45.8
Sample A Male 52.1
Sample B Male 46.8
Sample C Female 45.8
Sample D Female 50.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
68924431 Antisense, RP_050303_02_D01, Mouse strain C57BL/6J (56 days, male) 1.7

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