MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA Brain:17.4 nTPM
GTEx:42.6 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:44.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
1827 Male, age 72, unknown 13.2
2019 Male, age 18, unknown 13.2
1870 Female, age 42, unknown 13.1
2828 Female, age 72, unknown 12.3
2411 Female, age 72, unknown 11.9
1833 Male, age 53, unknown 10.4
2586 Male, age 75, left hemisphere 9.5
2666 Male, age 74, left hemisphere 9.4
1830 Male, age 51, unknown 8.8
2219 Male, age 76, both hemispheres 8.8
Dorsal raphe nucleus
nTPM: 13.8
2298 Female, age 72, unknown 17.0
2750 Male, age 76, both hemispheres 13.9
2047 Male, age 72, unknown 13.1
1828 Male, age 53, unknown 12.5
2016 Female, age 72, unknown 12.4
Inferior colliculus
nTPM: 12.2
2097 Female, age 72, unknown 15.1
1890 Male, age 53, unknown 11.6
2849 Male, age 72, unknown 11.1
1848 Female, age 42, unknown 10.9
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 13.2
2502 Female, age 75, unknown 11.0
1795 Male, age 51, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 11.1
2850 Male, age 76, both hemispheres 14.8
1831 Male, age 72, unknown 10.9
1840 Male, age 53, unknown 9.8
2464 Female, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 11.9
2140 Male, age 76, both hemispheres 13.5
2272 Male, age 74, both hemispheres 13.4
2053 Male, age 18, unknown 8.8
Pretectal area
nTPM: 12.5
2007 Male, age 72, unknown 16.4
1815 Male, age 53, unknown 15.3
1816 Male, age 51, unknown 14.2
1817 Female, age 42, unknown 13.7
2224 Female, age 72, unknown 13.6
1944 Female, age 72, unknown 13.5
2825 Male, age 18, unknown 11.7
2667 Female, age 75, unknown 11.2
2316 Male, age 76, right hemisphere 10.7
2273 Male, age 74, both hemispheres 9.5
2407 Male, age 75, both hemispheres 7.5
Red nucleus
nTPM: 12.4
2584 Male, age 75, left hemisphere 15.4
1821 Female, age 72, unknown 15.2
2725 Female, age 75, unknown 15.1
1954 Female, age 42, unknown 13.9
2823 Male, age 76, right hemisphere 13.9
1865 Male, age 51, unknown 12.3
1904 Male, age 53, unknown 11.0
2588 Male, age 74, left hemisphere 11.0
2503 Female, age 72, unknown 10.9
2785 Male, age 18, unknown 10.8
2227 Male, age 72, unknown 10.1
2769 Male, age 72, unknown 8.8
Substantia nigra
nTPM: 13.5
1916 Female, age 42, unknown 21.7
1851 Male, age 51, unknown 16.7
1889 Female, age 72, unknown 16.5
1941 Male, age 53, unknown 15.7
2241 Male, age 72, unknown 15.5
2699 Male, age 18, unknown 13.3
2665 Male, age 74, both hemispheres 13.1
2590 Female, age 75, unknown 10.2
2583 Male, age 75, right hemisphere 8.2
2409 Female, age 72, unknown 4.3
Superior colliculus
nTPM: 10.4
2087 Female, age 72, unknown 13.1
2668 Female, age 75, unknown 11.8
2261 Male, age 18, unknown 11.0
1913 Female, age 42, unknown 10.9
2587 Male, age 74, left hemisphere 10.9
1796 Male, age 53, unknown 10.4
1995 Male, age 72, unknown 9.8
1839 Male, age 51, unknown 9.6
1895 Male, age 76, right hemisphere 9.5
2664 Male, age 75, both hemispheres 7.0
Ventral tegmental area
nTPM: 13.6
2410 Female, age 72, unknown 16.0
1915 Female, age 42, unknown 15.1
2218 Male, age 76, both hemispheres 14.4
1942 Male, age 51, unknown 12.5
2021 Male, age 53, unknown 12.5
2223 Female, age 72, unknown 10.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 139

Max nTPM: 67.1
Min nTPM: 15.9
Std nTPM: 9.4
Median nTPM: 42.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 67.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 62.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 61.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 60.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 60.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 58.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 57.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.3
FF:10158-103A5 76 years, female 79.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.1
Samples: 4

Max nTPM: 14.9
Min nTPM: 8.7
Sample A Female 14.9
Sample B Female 11.4
Sample C Male 13.5
Sample D Male 8.7
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 14.7
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 12.9
Sample C Male 14.7
Sample D Male 14.5
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 11.8
Min nTPM: 10.4
Sample B Female 11.3
Sample C Male 11.8
Sample D Male 10.4
Superior colliculi
nTPM: 13.5
Samples: 4

Max nTPM: 15.6
Min nTPM: 11.1
Sample A Female 14.6
Sample B Female 11.1
Sample C Male 15.6
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 48.9
Min nTPM: 42.2
Sample A Male 43.5
Sample B Male 42.2
Sample C Female 48.9
Sample D Female 42.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68924431 Antisense, RP_050303_02_D01, Mouse strain C57BL/6J (56 days, male) 0.5

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