MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:18.8 nTPM
GTEx:13.7 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:24.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2219 Male, age 76, both hemispheres 18.6
1870 Female, age 42, unknown 17.9
2019 Male, age 18, unknown 16.6
1833 Male, age 53, unknown 16.2
1830 Male, age 51, unknown 16.1
1827 Male, age 72, unknown 15.5
2411 Female, age 72, unknown 15.2
2666 Male, age 74, left hemisphere 14.1
2586 Male, age 75, left hemisphere 12.9
2828 Female, age 72, unknown 12.8
Dorsal raphe nucleus
nTPM: 15.2
1828 Male, age 53, unknown 17.1
2016 Female, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 15.3
2047 Male, age 72, unknown 14.3
2298 Female, age 72, unknown 13.6
Inferior colliculus
nTPM: 15.6
2849 Male, age 72, unknown 17.2
1848 Female, age 42, unknown 15.8
2097 Female, age 72, unknown 15.5
1890 Male, age 53, unknown 14.0
Median raphe nucleus
nTPM: 18.8
2220 Male, age 76, midline 18.8
Periaquaductal grey, anterior
nTPM: 11.7
1947 Male, age 18, unknown 12.0
2502 Female, age 75, unknown 12.0
1795 Male, age 51, unknown 11.1
Periaquaductal grey, dorsal
nTPM: 15.5
2850 Male, age 76, both hemispheres 17.6
1831 Male, age 72, unknown 15.9
1840 Male, age 53, unknown 14.6
2464 Female, age 72, unknown 13.9
Periaquaductal grey, lateral
nTPM: 13.9
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 13.4
2272 Male, age 74, both hemispheres 13.3
Pretectal area
nTPM: 16.2
1944 Female, age 72, unknown 19.0
1817 Female, age 42, unknown 18.2
1816 Male, age 51, unknown 17.8
1815 Male, age 53, unknown 17.5
2007 Male, age 72, unknown 16.9
2224 Female, age 72, unknown 15.9
2667 Female, age 75, unknown 15.3
2407 Male, age 75, both hemispheres 14.7
2273 Male, age 74, both hemispheres 14.4
2825 Male, age 18, unknown 14.2
2316 Male, age 76, right hemisphere 14.1
Red nucleus
nTPM: 16.6
2503 Female, age 72, unknown 19.3
1821 Female, age 72, unknown 19.2
2725 Female, age 75, unknown 18.9
1865 Male, age 51, unknown 16.5
1954 Female, age 42, unknown 16.4
1904 Male, age 53, unknown 16.3
2785 Male, age 18, unknown 16.3
2823 Male, age 76, right hemisphere 16.3
2227 Male, age 72, unknown 15.7
2769 Male, age 72, unknown 15.1
2584 Male, age 75, left hemisphere 14.7
2588 Male, age 74, left hemisphere 14.3
Substantia nigra
nTPM: 15.6
2409 Female, age 72, unknown 18.9
1889 Female, age 72, unknown 17.3
1916 Female, age 42, unknown 16.7
2699 Male, age 18, unknown 16.5
2241 Male, age 72, unknown 15.4
1851 Male, age 51, unknown 15.2
1941 Male, age 53, unknown 15.1
2583 Male, age 75, right hemisphere 13.9
2665 Male, age 74, both hemispheres 13.9
2590 Female, age 75, unknown 13.1
Superior colliculus
nTPM: 15.2
1913 Female, age 42, unknown 17.6
1895 Male, age 76, right hemisphere 16.6
2668 Female, age 75, unknown 16.0
1995 Male, age 72, unknown 15.5
1839 Male, age 51, unknown 15.4
2587 Male, age 74, left hemisphere 15.3
2087 Female, age 72, unknown 14.8
1796 Male, age 53, unknown 14.3
2261 Male, age 18, unknown 13.9
2664 Male, age 75, both hemispheres 12.4
Ventral tegmental area
nTPM: 15.8
2223 Female, age 72, unknown 17.5
2218 Male, age 76, both hemispheres 16.1
2021 Male, age 53, unknown 15.8
2410 Female, age 72, unknown 15.5
1915 Female, age 42, unknown 15.3
1942 Male, age 51, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 139

Max nTPM: 21.6
Min nTPM: 9.0
Std nTPM: 2.3
Median nTPM: 13.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 21.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 20.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 20.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 18.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 18.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 17.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.9
FF:10158-103A5 76 years, female 25.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 9.3
Sample C Male 8.8
Sample D Male 11.5
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 9.2
Sample C Male 9.2
Sample D Male 9.7
Periaqueductal gray
nTPM: 9.6
Samples: 3

Max nTPM: 10.6
Min nTPM: 8.8
Sample B Female 9.5
Sample C Male 8.8
Sample D Male 10.6
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 8.3
Sample C Male 8.6
Sample D Male 9.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 25.5
Min nTPM: 24.0
Sample A Male 24.0
Sample B Male 24.5
Sample C Female 25.5
Sample D Female 24.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68744546 Antisense, RP_050208_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2

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