MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:6.9 nTPM
GTEx:8.2 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:4.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.8
2828 Female, age 72, unknown 3.0
2019 Male, age 18, unknown 2.7
2411 Female, age 72, unknown 2.2
1827 Male, age 72, unknown 2.1
2666 Male, age 74, left hemisphere 2.1
1830 Male, age 51, unknown 1.7
1833 Male, age 53, unknown 1.6
1870 Female, age 42, unknown 1.3
2586 Male, age 75, left hemisphere 0.8
2219 Male, age 76, both hemispheres 0.6
Dorsal raphe nucleus
nTPM: 4.0
2298 Female, age 72, unknown 6.9
2016 Female, age 72, unknown 4.7
2047 Male, age 72, unknown 3.2
1828 Male, age 53, unknown 3.0
2750 Male, age 76, both hemispheres 2.5
Inferior colliculus
nTPM: 3.3
1890 Male, age 53, unknown 4.3
2097 Female, age 72, unknown 4.1
1848 Female, age 42, unknown 2.9
2849 Male, age 72, unknown 1.9
Median raphe nucleus
nTPM: 2.9
2220 Male, age 76, midline 2.9
Periaquaductal grey, anterior
nTPM: 3.6
1795 Male, age 51, unknown 5.7
1947 Male, age 18, unknown 2.7
2502 Female, age 75, unknown 2.4
Periaquaductal grey, dorsal
nTPM: 5.2
1831 Male, age 72, unknown 8.5
2850 Male, age 76, both hemispheres 6.0
2464 Female, age 72, unknown 3.3
1840 Male, age 53, unknown 3.1
Periaquaductal grey, lateral
nTPM: 6.9
2272 Male, age 74, both hemispheres 9.0
2140 Male, age 76, both hemispheres 6.9
2053 Male, age 18, unknown 4.8
Pretectal area
nTPM: 3.9
1816 Male, age 51, unknown 6.3
2273 Male, age 74, both hemispheres 5.9
1815 Male, age 53, unknown 5.4
2007 Male, age 72, unknown 4.3
2407 Male, age 75, both hemispheres 3.8
2224 Female, age 72, unknown 3.7
1944 Female, age 72, unknown 3.6
2825 Male, age 18, unknown 3.5
2316 Male, age 76, right hemisphere 3.1
2667 Female, age 75, unknown 2.0
1817 Female, age 42, unknown 1.9
Red nucleus
nTPM: 2.6
2725 Female, age 75, unknown 5.7
2823 Male, age 76, right hemisphere 4.4
2503 Female, age 72, unknown 3.5
1821 Female, age 72, unknown 2.3
2227 Male, age 72, unknown 2.3
2588 Male, age 74, left hemisphere 2.2
2584 Male, age 75, left hemisphere 2.1
2769 Male, age 72, unknown 2.1
1904 Male, age 53, unknown 2.0
2785 Male, age 18, unknown 2.0
1865 Male, age 51, unknown 1.6
1954 Female, age 42, unknown 1.4
Substantia nigra
nTPM: 3.2
1889 Female, age 72, unknown 5.5
2590 Female, age 75, unknown 5.3
2665 Male, age 74, both hemispheres 4.0
2409 Female, age 72, unknown 3.7
2699 Male, age 18, unknown 3.2
2583 Male, age 75, right hemisphere 3.0
1851 Male, age 51, unknown 2.5
2241 Male, age 72, unknown 2.1
1941 Male, age 53, unknown 2.0
1916 Female, age 42, unknown 1.0
Superior colliculus
nTPM: 3.1
2664 Male, age 75, both hemispheres 4.5
2261 Male, age 18, unknown 4.4
2587 Male, age 74, left hemisphere 4.3
1995 Male, age 72, unknown 3.9
1796 Male, age 53, unknown 3.1
1913 Female, age 42, unknown 2.7
2087 Female, age 72, unknown 2.5
1839 Male, age 51, unknown 2.1
1895 Male, age 76, right hemisphere 2.0
2668 Female, age 75, unknown 1.7
Ventral tegmental area
nTPM: 4.6
2021 Male, age 53, unknown 7.3
1915 Female, age 42, unknown 5.8
2223 Female, age 72, unknown 4.2
2218 Male, age 76, both hemispheres 4.1
1942 Male, age 51, unknown 3.3
2410 Female, age 72, unknown 2.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 91.2
Min nTPM: 0.2
Std nTPM: 9.9
Median nTPM: 5.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 91.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 51.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 39.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 34.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 24.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 24.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 20.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 18.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 18.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 17.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 17.1
Sample C Male 9.2
Sample D Male 10.3
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.4
Sample A Female 8.8
Sample B Female 8.8
Sample C Male 4.4
Sample D Male 4.9
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 13.0
Min nTPM: 10.3
Sample B Female 10.3
Sample C Male 13.0
Sample D Male 10.8
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.5
Sample A Female 7.3
Sample B Female 11.6
Sample C Male 6.5
Sample D Male 6.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.9
Sample A Male 5.2
Sample B Male 5.1
Sample C Female 5.0
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69980310 Antisense, RP_050512_04_C08, Mouse strain C57BL/6J (56 days, male) 0.2

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