MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:54.6 nTPM
GTEx:28.3 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:160.9 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.7
1827 Male, age 72, unknown 44.2
1870 Female, age 42, unknown 43.9
1833 Male, age 53, unknown 42.4
2411 Female, age 72, unknown 42.4
2019 Male, age 18, unknown 41.9
1830 Male, age 51, unknown 40.3
2219 Male, age 76, both hemispheres 40.2
2828 Female, age 72, unknown 35.2
2586 Male, age 75, left hemisphere 33.4
2666 Male, age 74, left hemisphere 32.9
Dorsal raphe nucleus
nTPM: 48.0
2298 Female, age 72, unknown 54.6
2047 Male, age 72, unknown 49.1
1828 Male, age 53, unknown 49.0
2750 Male, age 76, both hemispheres 44.1
2016 Female, age 72, unknown 43.4
Inferior colliculus
nTPM: 43.9
2097 Female, age 72, unknown 48.6
1848 Female, age 42, unknown 45.9
2849 Male, age 72, unknown 43.0
1890 Male, age 53, unknown 38.1
Median raphe nucleus
nTPM: 54.6
2220 Male, age 76, midline 54.6
Periaquaductal grey, anterior
nTPM: 41.9
1947 Male, age 18, unknown 44.4
2502 Female, age 75, unknown 42.2
1795 Male, age 51, unknown 38.9
Periaquaductal grey, dorsal
nTPM: 43.9
2850 Male, age 76, both hemispheres 50.4
1840 Male, age 53, unknown 47.3
1831 Male, age 72, unknown 39.0
2464 Female, age 72, unknown 38.8
Periaquaductal grey, lateral
nTPM: 44.2
2272 Male, age 74, both hemispheres 47.1
2140 Male, age 76, both hemispheres 43.1
2053 Male, age 18, unknown 42.5
Pretectal area
nTPM: 47.1
2007 Male, age 72, unknown 53.9
1817 Female, age 42, unknown 52.9
1944 Female, age 72, unknown 52.3
1816 Male, age 51, unknown 51.0
2273 Male, age 74, both hemispheres 50.4
2224 Female, age 72, unknown 50.0
1815 Male, age 53, unknown 48.1
2667 Female, age 75, unknown 45.0
2825 Male, age 18, unknown 43.7
2407 Male, age 75, both hemispheres 35.7
2316 Male, age 76, right hemisphere 35.4
Red nucleus
nTPM: 40.6
2725 Female, age 75, unknown 51.5
1821 Female, age 72, unknown 51.1
1954 Female, age 42, unknown 40.4
1865 Male, age 51, unknown 40.1
2503 Female, age 72, unknown 39.9
2785 Male, age 18, unknown 39.8
2823 Male, age 76, right hemisphere 38.9
2769 Male, age 72, unknown 38.6
2584 Male, age 75, left hemisphere 38.2
2588 Male, age 74, left hemisphere 37.1
1904 Male, age 53, unknown 36.9
2227 Male, age 72, unknown 34.9
Substantia nigra
nTPM: 51.3
1916 Female, age 42, unknown 58.9
1941 Male, age 53, unknown 58.9
2241 Male, age 72, unknown 57.5
2409 Female, age 72, unknown 56.8
1889 Female, age 72, unknown 56.2
1851 Male, age 51, unknown 51.4
2699 Male, age 18, unknown 49.5
2583 Male, age 75, right hemisphere 46.0
2665 Male, age 74, both hemispheres 40.3
2590 Female, age 75, unknown 37.6
Superior colliculus
nTPM: 41.3
2087 Female, age 72, unknown 45.5
1895 Male, age 76, right hemisphere 45.4
2668 Female, age 75, unknown 44.5
1839 Male, age 51, unknown 43.8
2587 Male, age 74, left hemisphere 43.3
2261 Male, age 18, unknown 42.1
1796 Male, age 53, unknown 39.7
1995 Male, age 72, unknown 37.5
1913 Female, age 42, unknown 36.8
2664 Male, age 75, both hemispheres 34.1
Ventral tegmental area
nTPM: 45.7
1915 Female, age 42, unknown 50.0
2218 Male, age 76, both hemispheres 49.8
2410 Female, age 72, unknown 49.1
2223 Female, age 72, unknown 42.8
2021 Male, age 53, unknown 41.5
1942 Male, age 51, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 59.2
Min nTPM: 15.5
Std nTPM: 7.5
Median nTPM: 26.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 59.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 41.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 39.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 38.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 38.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 43.3
Min nTPM: 28.7
Sample A Female 43.3
Sample B Female 30.8
Sample C Male 42.0
Sample D Male 28.7
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 47.5
Min nTPM: 37.7
Sample A Female 38.0
Sample B Female 37.7
Sample C Male 47.5
Sample D Male 40.1
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 39.0
Min nTPM: 32.9
Sample B Female 34.6
Sample C Male 39.0
Sample D Male 32.9
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 50.3
Min nTPM: 29.6
Sample A Female 40.6
Sample B Female 29.6
Sample C Male 50.3
Sample D Male 39.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.0
Samples: 4

Max nTPM: 164.4
Min nTPM: 158.5
Sample A Male 160.9
Sample B Male 164.4
Sample C Female 158.5
Sample D Female 160.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
69526862 Antisense, RP_050421_01_G08, Mouse strain C57BL/6J (56 days, male) 5.5

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