MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:17.2 nTPM
GTEx:43.7 nTPM
FANTOM5:50.3 Scaled Tags Per Million
Pig:45.2 nTPM
Mouse:29.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
2411 Female, age 72, unknown 15.5
1870 Female, age 42, unknown 13.6
1827 Male, age 72, unknown 13.0
2666 Male, age 74, left hemisphere 12.2
1833 Male, age 53, unknown 11.5
2219 Male, age 76, both hemispheres 10.7
2019 Male, age 18, unknown 10.5
2828 Female, age 72, unknown 9.9
1830 Male, age 51, unknown 9.6
2586 Male, age 75, left hemisphere 9.1
Dorsal raphe nucleus
nTPM: 12.5
2047 Male, age 72, unknown 14.4
2298 Female, age 72, unknown 13.7
1828 Male, age 53, unknown 12.9
2750 Male, age 76, both hemispheres 11.9
2016 Female, age 72, unknown 9.5
Inferior colliculus
nTPM: 10.7
2097 Female, age 72, unknown 12.2
1848 Female, age 42, unknown 11.3
2849 Male, age 72, unknown 9.7
1890 Male, age 53, unknown 9.6
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 10.1
1947 Male, age 18, unknown 12.6
1795 Male, age 51, unknown 10.5
2502 Female, age 75, unknown 7.3
Periaquaductal grey, dorsal
nTPM: 10.5
2850 Male, age 76, both hemispheres 13.3
1831 Male, age 72, unknown 10.2
2464 Female, age 72, unknown 9.4
1840 Male, age 53, unknown 9.1
Periaquaductal grey, lateral
nTPM: 11.4
2272 Male, age 74, both hemispheres 14.9
2053 Male, age 18, unknown 10.4
2140 Male, age 76, both hemispheres 8.9
Pretectal area
nTPM: 11.5
1817 Female, age 42, unknown 13.9
2224 Female, age 72, unknown 13.4
2273 Male, age 74, both hemispheres 13.1
1816 Male, age 51, unknown 12.7
1815 Male, age 53, unknown 12.3
1944 Female, age 72, unknown 12.3
2667 Female, age 75, unknown 12.0
2825 Male, age 18, unknown 11.6
2407 Male, age 75, both hemispheres 11.2
2007 Male, age 72, unknown 9.6
2316 Male, age 76, right hemisphere 4.8
Red nucleus
nTPM: 11.5
1821 Female, age 72, unknown 15.2
1865 Male, age 51, unknown 13.6
1954 Female, age 42, unknown 13.2
1904 Male, age 53, unknown 12.4
2588 Male, age 74, left hemisphere 11.7
2725 Female, age 75, unknown 11.6
2503 Female, age 72, unknown 11.3
2769 Male, age 72, unknown 10.7
2227 Male, age 72, unknown 10.3
2785 Male, age 18, unknown 10.3
2823 Male, age 76, right hemisphere 9.8
2584 Male, age 75, left hemisphere 7.7
Substantia nigra
nTPM: 13.2
1889 Female, age 72, unknown 19.6
1916 Female, age 42, unknown 18.0
2241 Male, age 72, unknown 15.4
1851 Male, age 51, unknown 13.4
1941 Male, age 53, unknown 13.4
2409 Female, age 72, unknown 12.5
2590 Female, age 75, unknown 12.4
2699 Male, age 18, unknown 12.1
2665 Male, age 74, both hemispheres 8.8
2583 Male, age 75, right hemisphere 6.8
Superior colliculus
nTPM: 11.3
2668 Female, age 75, unknown 14.2
2664 Male, age 75, both hemispheres 11.9
2261 Male, age 18, unknown 11.5
1796 Male, age 53, unknown 11.3
2587 Male, age 74, left hemisphere 11.3
1839 Male, age 51, unknown 10.8
2087 Female, age 72, unknown 10.8
1995 Male, age 72, unknown 10.6
1895 Male, age 76, right hemisphere 10.3
1913 Female, age 42, unknown 10.3
Ventral tegmental area
nTPM: 13.4
1915 Female, age 42, unknown 16.2
2410 Female, age 72, unknown 15.7
2218 Male, age 76, both hemispheres 13.1
2021 Male, age 53, unknown 12.5
2223 Female, age 72, unknown 12.3
1942 Male, age 51, unknown 10.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 139

Max nTPM: 96.1
Min nTPM: 24.8
Std nTPM: 10.7
Median nTPM: 41.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 75.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 74.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 67.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 64.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 64.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 64.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 61.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 61.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 60.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.3
FF:10158-103A5 76 years, female 50.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.2
Samples: 4

Max nTPM: 50.2
Min nTPM: 41.7
Sample A Female 44.6
Sample B Female 41.7
Sample C Male 44.3
Sample D Male 50.2
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 54.4
Min nTPM: 33.8
Sample A Female 54.4
Sample B Female 40.5
Sample C Male 35.0
Sample D Male 33.8
Periaqueductal gray
nTPM: 36.5
Samples: 3

Max nTPM: 38.8
Min nTPM: 32.2
Sample B Female 38.8
Sample C Male 32.2
Sample D Male 38.5
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 43.9
Min nTPM: 38.6
Sample A Female 43.9
Sample B Female 43.4
Sample C Male 38.6
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 32.9
Min nTPM: 27.6
Sample A Male 32.9
Sample B Male 28.8
Sample C Female 27.6
Sample D Female 29.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68522344 Antisense, RP_050118_01_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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