MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.2 nTPM
HPA Brain:93.4 nTPM
GTEx:103.2 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:203.0 nTPM
Mouse:123.7 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.0
2666 Male, age 74, left hemisphere 102.9
2586 Male, age 75, left hemisphere 94.3
2219 Male, age 76, both hemispheres 91.6
1827 Male, age 72, unknown 90.7
1870 Female, age 42, unknown 86.2
1830 Male, age 51, unknown 86.0
2828 Female, age 72, unknown 85.3
1833 Male, age 53, unknown 82.4
2411 Female, age 72, unknown 82.4
2019 Male, age 18, unknown 77.8
Dorsal raphe nucleus
nTPM: 73.7
2750 Male, age 76, both hemispheres 77.9
2016 Female, age 72, unknown 77.6
1828 Male, age 53, unknown 76.7
2047 Male, age 72, unknown 72.5
2298 Female, age 72, unknown 63.6
Inferior colliculus
nTPM: 78.6
2849 Male, age 72, unknown 86.6
1848 Female, age 42, unknown 76.4
1890 Male, age 53, unknown 75.8
2097 Female, age 72, unknown 75.4
Median raphe nucleus
nTPM: 69.8
2220 Male, age 76, midline 69.8
Periaquaductal grey, anterior
nTPM: 85.5
1947 Male, age 18, unknown 94.2
2502 Female, age 75, unknown 83.2
1795 Male, age 51, unknown 79.0
Periaquaductal grey, dorsal
nTPM: 82.6
1831 Male, age 72, unknown 86.9
1840 Male, age 53, unknown 85.7
2464 Female, age 72, unknown 79.2
2850 Male, age 76, both hemispheres 78.8
Periaquaductal grey, lateral
nTPM: 80.2
2053 Male, age 18, unknown 91.6
2140 Male, age 76, both hemispheres 77.4
2272 Male, age 74, both hemispheres 71.5
Pretectal area
nTPM: 84.8
1815 Male, age 53, unknown 100.9
1816 Male, age 51, unknown 94.8
1944 Female, age 72, unknown 92.6
2407 Male, age 75, both hemispheres 89.3
1817 Female, age 42, unknown 86.3
2825 Male, age 18, unknown 84.2
2316 Male, age 76, right hemisphere 83.0
2007 Male, age 72, unknown 82.2
2224 Female, age 72, unknown 75.2
2273 Male, age 74, both hemispheres 73.0
2667 Female, age 75, unknown 71.8
Red nucleus
nTPM: 93.4
2588 Male, age 74, left hemisphere 104.3
2725 Female, age 75, unknown 103.3
2503 Female, age 72, unknown 103.1
2584 Male, age 75, left hemisphere 98.8
1821 Female, age 72, unknown 94.2
1904 Male, age 53, unknown 91.5
1865 Male, age 51, unknown 91.3
2227 Male, age 72, unknown 90.7
2823 Male, age 76, right hemisphere 88.2
2769 Male, age 72, unknown 87.5
2785 Male, age 18, unknown 83.9
1954 Female, age 42, unknown 83.7
Substantia nigra
nTPM: 88.4
1916 Female, age 42, unknown 100.0
1851 Male, age 51, unknown 93.8
2583 Male, age 75, right hemisphere 91.1
2699 Male, age 18, unknown 90.7
2590 Female, age 75, unknown 88.9
1889 Female, age 72, unknown 85.4
1941 Male, age 53, unknown 84.3
2665 Male, age 74, both hemispheres 83.7
2409 Female, age 72, unknown 83.5
2241 Male, age 72, unknown 82.3
Superior colliculus
nTPM: 89.0
2668 Female, age 75, unknown 95.7
1913 Female, age 42, unknown 94.8
1995 Male, age 72, unknown 90.2
1796 Male, age 53, unknown 89.7
1839 Male, age 51, unknown 88.2
2664 Male, age 75, both hemispheres 87.8
2587 Male, age 74, left hemisphere 87.6
1895 Male, age 76, right hemisphere 86.1
2261 Male, age 18, unknown 85.5
2087 Female, age 72, unknown 84.7
Ventral tegmental area
nTPM: 83.3
2223 Female, age 72, unknown 95.6
2410 Female, age 72, unknown 86.1
2218 Male, age 76, both hemispheres 82.9
1915 Female, age 42, unknown 81.8
1942 Male, age 51, unknown 78.7
2021 Male, age 53, unknown 74.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.2
Samples: 139

Max nTPM: 198.9
Min nTPM: 65.2
Std nTPM: 24.2
Median nTPM: 98.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 198.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 176.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 169.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 167.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 161.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 158.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 150.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 150.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 140.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 139.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 139.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.5
FF:10158-103A5 76 years, female 80.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 203.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 177.9
Samples: 4

Max nTPM: 212.7
Min nTPM: 162.8
Sample A Female 212.7
Sample B Female 169.8
Sample C Male 166.1
Sample D Male 162.8
Midbrain
nTPM: 203.0
Samples: 4

Max nTPM: 234.7
Min nTPM: 167.0
Sample A Female 234.7
Sample B Female 182.4
Sample C Male 227.9
Sample D Male 167.0
Periaqueductal gray
nTPM: 171.3
Samples: 3

Max nTPM: 179.1
Min nTPM: 166.0
Sample B Female 179.1
Sample C Male 168.7
Sample D Male 166.0
Superior colliculi
nTPM: 195.0
Samples: 4

Max nTPM: 232.7
Min nTPM: 165.3
Sample A Female 205.8
Sample B Female 165.3
Sample C Male 232.7
Sample D Male 176.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.7
Samples: 4

Max nTPM: 130.4
Min nTPM: 106.4
Sample A Male 129.9
Sample B Male 128.1
Sample C Female 130.4
Sample D Female 106.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69838238 Antisense, RP_050224_02_D08, Mouse strain C57BL/6J (56 days, male) 3.2

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