MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:15.2 nTPM
GTEx:9.6 nTPM
FANTOM5:10.0 Scaled Tags Per Million
Pig:28.3 nTPM
Mouse:39.4 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
2019 Male, age 18, unknown 18.4
2586 Male, age 75, left hemisphere 16.3
2219 Male, age 76, both hemispheres 12.5
2666 Male, age 74, left hemisphere 10.7
2411 Female, age 72, unknown 10.4
1827 Male, age 72, unknown 10.3
1830 Male, age 51, unknown 9.7
2828 Female, age 72, unknown 9.5
1833 Male, age 53, unknown 9.2
1870 Female, age 42, unknown 8.8
Dorsal raphe nucleus
nTPM: 13.1
2298 Female, age 72, unknown 15.4
1828 Male, age 53, unknown 13.7
2047 Male, age 72, unknown 13.2
2016 Female, age 72, unknown 11.9
2750 Male, age 76, both hemispheres 11.2
Inferior colliculus
nTPM: 12.6
1890 Male, age 53, unknown 15.3
2097 Female, age 72, unknown 15.0
1848 Female, age 42, unknown 11.3
2849 Male, age 72, unknown 8.9
Median raphe nucleus
nTPM: 13.3
2220 Male, age 76, midline 13.3
Periaquaductal grey, anterior
nTPM: 10.5
2502 Female, age 75, unknown 11.5
1795 Male, age 51, unknown 10.0
1947 Male, age 18, unknown 9.9
Periaquaductal grey, dorsal
nTPM: 11.9
1840 Male, age 53, unknown 12.7
2464 Female, age 72, unknown 12.6
1831 Male, age 72, unknown 12.3
2850 Male, age 76, both hemispheres 9.9
Periaquaductal grey, lateral
nTPM: 10.6
2272 Male, age 74, both hemispheres 11.2
2053 Male, age 18, unknown 10.9
2140 Male, age 76, both hemispheres 9.8
Pretectal area
nTPM: 15.2
2007 Male, age 72, unknown 24.2
1816 Male, age 51, unknown 21.2
1817 Female, age 42, unknown 21.1
1944 Female, age 72, unknown 20.3
1815 Male, age 53, unknown 16.6
2224 Female, age 72, unknown 14.0
2667 Female, age 75, unknown 12.3
2273 Male, age 74, both hemispheres 11.7
2407 Male, age 75, both hemispheres 10.3
2316 Male, age 76, right hemisphere 7.8
2825 Male, age 18, unknown 7.4
Red nucleus
nTPM: 11.6
2785 Male, age 18, unknown 16.0
1821 Female, age 72, unknown 14.0
2725 Female, age 75, unknown 14.0
2823 Male, age 76, right hemisphere 11.9
1904 Male, age 53, unknown 11.7
2584 Male, age 75, left hemisphere 11.0
1865 Male, age 51, unknown 10.8
2503 Female, age 72, unknown 10.6
1954 Female, age 42, unknown 10.2
2769 Male, age 72, unknown 10.0
2227 Male, age 72, unknown 9.7
2588 Male, age 74, left hemisphere 9.6
Substantia nigra
nTPM: 13.9
1889 Female, age 72, unknown 17.4
2241 Male, age 72, unknown 17.1
1916 Female, age 42, unknown 15.6
2409 Female, age 72, unknown 15.4
1851 Male, age 51, unknown 14.2
1941 Male, age 53, unknown 14.1
2665 Male, age 74, both hemispheres 13.0
2583 Male, age 75, right hemisphere 12.4
2590 Female, age 75, unknown 10.3
2699 Male, age 18, unknown 9.2
Superior colliculus
nTPM: 12.8
2087 Female, age 72, unknown 17.0
2261 Male, age 18, unknown 15.8
2664 Male, age 75, both hemispheres 14.8
2668 Female, age 75, unknown 14.4
1895 Male, age 76, right hemisphere 12.1
2587 Male, age 74, left hemisphere 11.8
1995 Male, age 72, unknown 11.2
1839 Male, age 51, unknown 10.8
1796 Male, age 53, unknown 10.2
1913 Female, age 42, unknown 9.9
Ventral tegmental area
nTPM: 12.4
2218 Male, age 76, both hemispheres 15.5
2410 Female, age 72, unknown 12.4
1915 Female, age 42, unknown 12.2
1942 Male, age 51, unknown 11.8
2223 Female, age 72, unknown 11.8
2021 Male, age 53, unknown 10.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 18.8
Min nTPM: 3.9
Std nTPM: 2.6
Median nTPM: 9.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 18.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 14.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 13.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.0
FF:10158-103A5 76 years, female 10.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 24.7
Min nTPM: 21.7
Sample A Female 24.2
Sample B Female 21.7
Sample C Male 24.7
Sample D Male 24.3
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 33.9
Min nTPM: 21.7
Sample A Female 32.3
Sample B Female 21.7
Sample C Male 33.9
Sample D Male 24.1
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 21.9
Min nTPM: 20.2
Sample B Female 21.9
Sample C Male 21.9
Sample D Male 20.2
Superior colliculi
nTPM: 28.3
Samples: 4

Max nTPM: 31.7
Min nTPM: 25.5
Sample A Female 28.7
Sample B Female 27.4
Sample C Male 31.7
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 40.7
Min nTPM: 37.9
Sample A Male 38.7
Sample B Male 40.7
Sample C Female 40.4
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70546099 Antisense, RP_050623_03_F02, Mouse strain C57BL/6J (56 days, male) 2.3
74047772 Antisense, RP_051214_01_H09, Mouse strain C57BL/6J (56 days, male) 0.5

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