MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:62.5 nTPM
GTEx:8.0 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:47.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2586 Male, age 75, left hemisphere 62.4
2828 Female, age 72, unknown 61.0
1827 Male, age 72, unknown 59.4
1870 Female, age 42, unknown 58.7
2019 Male, age 18, unknown 56.0
2411 Female, age 72, unknown 52.3
1833 Male, age 53, unknown 52.0
1830 Male, age 51, unknown 49.1
2219 Male, age 76, both hemispheres 49.0
2666 Male, age 74, left hemisphere 47.9
Dorsal raphe nucleus
nTPM: 53.7
1828 Male, age 53, unknown 56.6
2298 Female, age 72, unknown 56.1
2016 Female, age 72, unknown 53.7
2047 Male, age 72, unknown 52.1
2750 Male, age 76, both hemispheres 50.0
Inferior colliculus
nTPM: 62.5
2097 Female, age 72, unknown 64.6
2849 Male, age 72, unknown 63.2
1890 Male, age 53, unknown 61.4
1848 Female, age 42, unknown 60.7
Median raphe nucleus
nTPM: 61.3
2220 Male, age 76, midline 61.3
Periaquaductal grey, anterior
nTPM: 55.8
1795 Male, age 51, unknown 58.3
2502 Female, age 75, unknown 56.3
1947 Male, age 18, unknown 52.9
Periaquaductal grey, dorsal
nTPM: 56.9
2850 Male, age 76, both hemispheres 71.1
1840 Male, age 53, unknown 57.5
1831 Male, age 72, unknown 51.3
2464 Female, age 72, unknown 47.6
Periaquaductal grey, lateral
nTPM: 55.1
2140 Male, age 76, both hemispheres 68.6
2053 Male, age 18, unknown 50.2
2272 Male, age 74, both hemispheres 46.5
Pretectal area
nTPM: 58.7
2316 Male, age 76, right hemisphere 65.7
1816 Male, age 51, unknown 63.8
1817 Female, age 42, unknown 60.4
2007 Male, age 72, unknown 59.7
1944 Female, age 72, unknown 59.5
2825 Male, age 18, unknown 57.2
1815 Male, age 53, unknown 57.1
2407 Male, age 75, both hemispheres 56.4
2667 Female, age 75, unknown 56.2
2273 Male, age 74, both hemispheres 55.1
2224 Female, age 72, unknown 55.0
Red nucleus
nTPM: 56.8
2725 Female, age 75, unknown 68.8
2785 Male, age 18, unknown 61.3
1821 Female, age 72, unknown 60.5
2503 Female, age 72, unknown 59.4
2227 Male, age 72, unknown 59.3
2769 Male, age 72, unknown 58.7
1904 Male, age 53, unknown 57.3
1865 Male, age 51, unknown 55.2
1954 Female, age 42, unknown 55.1
2584 Male, age 75, left hemisphere 51.7
2823 Male, age 76, right hemisphere 50.7
2588 Male, age 74, left hemisphere 44.1
Substantia nigra
nTPM: 55.1
1916 Female, age 42, unknown 65.1
1889 Female, age 72, unknown 59.5
2409 Female, age 72, unknown 55.8
2665 Male, age 74, both hemispheres 55.5
2241 Male, age 72, unknown 55.0
1851 Male, age 51, unknown 54.3
1941 Male, age 53, unknown 53.4
2699 Male, age 18, unknown 51.9
2583 Male, age 75, right hemisphere 51.2
2590 Female, age 75, unknown 48.8
Superior colliculus
nTPM: 54.4
2261 Male, age 18, unknown 60.3
1796 Male, age 53, unknown 57.7
2664 Male, age 75, both hemispheres 56.6
1839 Male, age 51, unknown 56.0
1913 Female, age 42, unknown 54.3
2087 Female, age 72, unknown 53.9
2587 Male, age 74, left hemisphere 53.0
2668 Female, age 75, unknown 51.8
1895 Male, age 76, right hemisphere 50.3
1995 Male, age 72, unknown 50.0
Ventral tegmental area
nTPM: 54.1
1915 Female, age 42, unknown 56.1
2218 Male, age 76, both hemispheres 55.7
2223 Female, age 72, unknown 54.7
1942 Male, age 51, unknown 53.0
2410 Female, age 72, unknown 52.6
2021 Male, age 53, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 17.9
Min nTPM: 2.9
Std nTPM: 2.5
Median nTPM: 7.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 17.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 15.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 14.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 12.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 12.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 12.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 11.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 25.9
Min nTPM: 21.3
Sample A Female 25.9
Sample B Female 21.7
Sample C Male 22.9
Sample D Male 21.3
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 27.8
Min nTPM: 24.7
Sample A Female 27.8
Sample B Female 24.7
Sample C Male 25.8
Sample D Male 26.8
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 25.6
Min nTPM: 22.0
Sample B Female 22.0
Sample C Male 25.6
Sample D Male 22.3
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 19.9
Sample A Female 29.0
Sample B Female 19.9
Sample C Male 25.5
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 51.4
Min nTPM: 45.2
Sample A Male 46.2
Sample B Male 51.4
Sample C Female 48.6
Sample D Female 45.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70546105 Antisense, RP_050623_03_F03, Mouse strain C57BL/6J (56 days, male) 0.1

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