MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:66.3 nTPM
GTEx:35.6 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:74.9 nTPM
Mouse:69.7 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.3
1870 Female, age 42, unknown 61.8
2828 Female, age 72, unknown 59.6
1827 Male, age 72, unknown 58.0
2411 Female, age 72, unknown 57.9
1830 Male, age 51, unknown 57.5
1833 Male, age 53, unknown 56.6
2586 Male, age 75, left hemisphere 56.4
2019 Male, age 18, unknown 53.5
2219 Male, age 76, both hemispheres 48.5
2666 Male, age 74, left hemisphere 43.2
Dorsal raphe nucleus
nTPM: 56.0
2750 Male, age 76, both hemispheres 60.3
2016 Female, age 72, unknown 59.5
2298 Female, age 72, unknown 58.3
1828 Male, age 53, unknown 52.2
2047 Male, age 72, unknown 49.5
Inferior colliculus
nTPM: 61.8
2097 Female, age 72, unknown 68.1
1848 Female, age 42, unknown 60.9
2849 Male, age 72, unknown 60.4
1890 Male, age 53, unknown 57.6
Median raphe nucleus
nTPM: 55.0
2220 Male, age 76, midline 55.0
Periaquaductal grey, anterior
nTPM: 66.3
2502 Female, age 75, unknown 70.6
1947 Male, age 18, unknown 68.3
1795 Male, age 51, unknown 59.9
Periaquaductal grey, dorsal
nTPM: 56.5
1840 Male, age 53, unknown 60.3
2850 Male, age 76, both hemispheres 59.8
1831 Male, age 72, unknown 56.3
2464 Female, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 66.3
2272 Male, age 74, both hemispheres 77.4
2140 Male, age 76, both hemispheres 60.9
2053 Male, age 18, unknown 60.6
Pretectal area
nTPM: 59.1
2273 Male, age 74, both hemispheres 76.3
2224 Female, age 72, unknown 64.0
2667 Female, age 75, unknown 59.8
2825 Male, age 18, unknown 59.4
1944 Female, age 72, unknown 58.4
1815 Male, age 53, unknown 56.2
2007 Male, age 72, unknown 56.0
1816 Male, age 51, unknown 55.6
2407 Male, age 75, both hemispheres 55.4
2316 Male, age 76, right hemisphere 55.3
1817 Female, age 42, unknown 53.9
Red nucleus
nTPM: 57.0
2503 Female, age 72, unknown 64.5
1865 Male, age 51, unknown 61.7
2227 Male, age 72, unknown 60.9
1954 Female, age 42, unknown 58.7
1904 Male, age 53, unknown 58.5
2785 Male, age 18, unknown 58.3
2769 Male, age 72, unknown 57.9
1821 Female, age 72, unknown 57.7
2725 Female, age 75, unknown 55.7
2823 Male, age 76, right hemisphere 50.8
2584 Male, age 75, left hemisphere 50.7
2588 Male, age 74, left hemisphere 48.9
Substantia nigra
nTPM: 54.7
2409 Female, age 72, unknown 61.1
2590 Female, age 75, unknown 58.6
1916 Female, age 42, unknown 57.9
1889 Female, age 72, unknown 57.0
1941 Male, age 53, unknown 55.3
1851 Male, age 51, unknown 54.8
2583 Male, age 75, right hemisphere 53.8
2241 Male, age 72, unknown 52.6
2699 Male, age 18, unknown 48.5
2665 Male, age 74, both hemispheres 47.6
Superior colliculus
nTPM: 57.6
2261 Male, age 18, unknown 67.3
1913 Female, age 42, unknown 64.5
1995 Male, age 72, unknown 62.2
2587 Male, age 74, left hemisphere 62.1
1796 Male, age 53, unknown 59.8
1839 Male, age 51, unknown 58.3
1895 Male, age 76, right hemisphere 55.4
2668 Female, age 75, unknown 50.1
2087 Female, age 72, unknown 49.2
2664 Male, age 75, both hemispheres 47.0
Ventral tegmental area
nTPM: 55.7
1915 Female, age 42, unknown 59.0
2223 Female, age 72, unknown 56.6
1942 Male, age 51, unknown 56.0
2021 Male, age 53, unknown 55.5
2410 Female, age 72, unknown 54.7
2218 Male, age 76, both hemispheres 52.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.6
Samples: 139

Max nTPM: 63.1
Min nTPM: 20.5
Std nTPM: 7.1
Median nTPM: 34.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 52.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 52.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 51.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 50.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 49.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 48.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.3
FF:10158-103A5 76 years, female 93.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.2
Samples: 4

Max nTPM: 74.2
Min nTPM: 62.9
Sample A Female 74.2
Sample B Female 63.0
Sample C Male 62.9
Sample D Male 64.6
Midbrain
nTPM: 74.9
Samples: 4

Max nTPM: 98.9
Min nTPM: 66.7
Sample A Female 98.9
Sample B Female 66.7
Sample C Male 66.7
Sample D Male 67.2
Periaqueductal gray
nTPM: 65.5
Samples: 3

Max nTPM: 69.1
Min nTPM: 60.9
Sample B Female 66.4
Sample C Male 69.1
Sample D Male 60.9
Superior colliculi
nTPM: 73.4
Samples: 4

Max nTPM: 81.2
Min nTPM: 67.4
Sample A Female 81.2
Sample B Female 74.2
Sample C Male 70.9
Sample D Male 67.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.7
Samples: 4

Max nTPM: 73.3
Min nTPM: 67.3
Sample A Male 68.2
Sample B Male 69.9
Sample C Female 73.3
Sample D Female 67.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
532636 Antisense, RP_040810_02_G11, Mouse strain C57BL/6J (56 days, male) 19.1
70919448 Antisense, RP_050713_01_D03, Mouse strain C57BL/6J (56 days, male) 3.8

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