MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:8.9 nTPM
GTEx:11.6 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Mouse:2.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.3
2019 Male, age 18, unknown 8.8
2666 Male, age 74, left hemisphere 8.8
1870 Female, age 42, unknown 8.6
1830 Male, age 51, unknown 8.3
2219 Male, age 76, both hemispheres 8.1
1833 Male, age 53, unknown 7.9
2828 Female, age 72, unknown 6.8
2411 Female, age 72, unknown 6.5
1827 Male, age 72, unknown 5.6
2586 Male, age 75, left hemisphere 3.2
Dorsal raphe nucleus
nTPM: 6.6
1828 Male, age 53, unknown 7.6
2750 Male, age 76, both hemispheres 7.5
2016 Female, age 72, unknown 6.7
2047 Male, age 72, unknown 5.9
2298 Female, age 72, unknown 5.3
Inferior colliculus
nTPM: 6.8
2097 Female, age 72, unknown 7.4
1890 Male, age 53, unknown 7.0
1848 Female, age 42, unknown 6.6
2849 Male, age 72, unknown 6.0
Median raphe nucleus
nTPM: 6.5
2220 Male, age 76, midline 6.5
Periaquaductal grey, anterior
nTPM: 7.6
2502 Female, age 75, unknown 11.2
1947 Male, age 18, unknown 6.2
1795 Male, age 51, unknown 5.3
Periaquaductal grey, dorsal
nTPM: 6.0
2850 Male, age 76, both hemispheres 7.2
1831 Male, age 72, unknown 6.2
2464 Female, age 72, unknown 6.2
1840 Male, age 53, unknown 4.3
Periaquaductal grey, lateral
nTPM: 6.9
2140 Male, age 76, both hemispheres 7.2
2053 Male, age 18, unknown 6.9
2272 Male, age 74, both hemispheres 6.5
Pretectal area
nTPM: 6.9
1815 Male, age 53, unknown 10.8
2316 Male, age 76, right hemisphere 8.9
2007 Male, age 72, unknown 7.1
2667 Female, age 75, unknown 6.7
1817 Female, age 42, unknown 6.4
1944 Female, age 72, unknown 6.4
2273 Male, age 74, both hemispheres 6.0
2407 Male, age 75, both hemispheres 5.9
2825 Male, age 18, unknown 5.9
1816 Male, age 51, unknown 5.8
2224 Female, age 72, unknown 5.6
Red nucleus
nTPM: 8.9
1821 Female, age 72, unknown 11.0
1954 Female, age 42, unknown 10.6
1904 Male, age 53, unknown 9.8
2227 Male, age 72, unknown 9.7
1865 Male, age 51, unknown 9.5
2769 Male, age 72, unknown 9.5
2503 Female, age 72, unknown 9.0
2823 Male, age 76, right hemisphere 9.0
2785 Male, age 18, unknown 8.4
2588 Male, age 74, left hemisphere 7.6
2725 Female, age 75, unknown 7.2
2584 Male, age 75, left hemisphere 5.3
Substantia nigra
nTPM: 8.0
2665 Male, age 74, both hemispheres 12.6
2409 Female, age 72, unknown 10.2
1851 Male, age 51, unknown 8.7
2241 Male, age 72, unknown 8.4
2699 Male, age 18, unknown 8.2
1916 Female, age 42, unknown 7.0
1889 Female, age 72, unknown 6.7
1941 Male, age 53, unknown 6.6
2590 Female, age 75, unknown 5.9
2583 Male, age 75, right hemisphere 5.1
Superior colliculus
nTPM: 6.3
2587 Male, age 74, left hemisphere 8.1
1895 Male, age 76, right hemisphere 7.2
1913 Female, age 42, unknown 7.0
1995 Male, age 72, unknown 6.7
2087 Female, age 72, unknown 6.6
2261 Male, age 18, unknown 6.4
2668 Female, age 75, unknown 6.3
1839 Male, age 51, unknown 6.0
1796 Male, age 53, unknown 4.5
2664 Male, age 75, both hemispheres 4.4
Ventral tegmental area
nTPM: 7.3
2218 Male, age 76, both hemispheres 8.3
1942 Male, age 51, unknown 8.1
2223 Female, age 72, unknown 7.7
2410 Female, age 72, unknown 7.0
1915 Female, age 42, unknown 6.3
2021 Male, age 53, unknown 6.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 49.2
Min nTPM: 0.9
Std nTPM: 7.5
Median nTPM: 9.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 49.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 35.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 29.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 25.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 24.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 24.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 24.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 24.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 24.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.5
Sample A Male 2.1
Sample B Male 2.6
Sample C Female 1.5
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69981163 Antisense, RP_050512_04_G09, Mouse strain C57BL/6J (56 days, male) 0.0

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