HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:24.2 nTPM
GTEx:16.1 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:28.6 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049023Antibody HPA052163
Glial cells LowLow
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.2
Sample id Sample description nTPM
Hippocampus
nTPM: 24.2
1898 Male, age 80, left hemisphere 28.0
2529 Female, age 94, left hemisphere 24.1
1911 Female, age 85, right hemisphere 23.8
2621 Female, age 67, right hemisphere 23.8
1855 Male, age 76, left hemisphere 23.0
2148 Female, age 91, left hemisphere 22.5
Dentate gyrus
nTPM: 22.7
2010 Male, age 76, both hemispheres 24.8
1927 Female, age 91, both hemispheres 23.9
2531 Female, age 67, both hemispheres 23.6
2246 Female, age 85, both hemispheres 22.5
2530 Female, age 94, left hemisphere 21.1
2528 Male, age 74, both hemispheres 20.2
Entorhinal gyrus
nTPM: 23.8
1938 Female, age 85, left hemisphere 27.3
1787 Male, age 76, left hemisphere 25.1
2117 Female, age 91, right hemisphere 24.3
2686 Male, age 75, right hemisphere 22.5
2764 Male, age 80, right hemisphere 22.0
2613 Female, age 94, left hemisphere 21.6
Hippocampus, CA1
nTPM: 21.9
2749 Male, age 80, left hemisphere 25.8
1873 Female, age 85, both hemispheres 23.9
2527 Male, age 74, both hemispheres 22.8
2045 Male, age 76, both hemispheres 19.8
2082 Female, age 91, right hemisphere 17.4
Hippocampus, CA2
nTPM: 22.7
1963 Male, age 80, left hemisphere 28.2
1892 Male, age 76, both hemispheres 23.4
2437 Female, age 94, left hemisphere 22.0
2249 Male, age 74, both hemispheres 21.7
2113 Female, age 91, right hemisphere 20.7
1940 Female, age 85, left hemisphere 20.4
Hippocampus, CA3
nTPM: 22.9
1891 Female, age 85, both hemispheres 25.6
2137 Male, age 80, left hemisphere 22.7
2861 Female, age 67, both hemispheres 22.7
1867 Male, age 76, both hemispheres 22.6
2620 Female, age 94, left hemisphere 22.2
2436 Male, age 74, both hemispheres 21.3
Parahippocampal cortex
nTPM: 22.5
1850 Male, age 80, both hemispheres 25.4
2532 Female, age 72, left hemisphere 24.5
2018 Male, age 76, both hemispheres 24.4
1933 Female, age 85, both hemispheres 24.2
1990 Female, age 91, right hemisphere 22.9
2622 Female, age 67, right hemisphere 22.0
2250 Female, age 67, right hemisphere 21.3
2692 Male, age 74, both hemispheres 20.4
2693 Female, age 94, both hemispheres 19.9
2245 Female, age 91, both hemispheres 19.8
Perirhinal gyrus
nTPM: 24.0
1841 Female, age 85, right hemisphere 28.3
1847 Female, age 91, left hemisphere 24.5
1794 Male, age 80, right hemisphere 23.7
2848 Male, age 76, right hemisphere 22.9
2521 Female, age 94, right hemisphere 20.9
Subiculum
nTPM: 21.9
1901 Male, age 80, both hemispheres 23.8
1977 Female, age 85, both hemispheres 22.4
2729 Female, age 91, right hemisphere 21.9
2042 Male, age 76, both hemispheres 21.8
2619 Male, age 74, both hemispheres 21.8
2438 Female, age 94, left hemisphere 19.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.1
Samples: 197

Max nTPM: 26.5
Min nTPM: 11.4
Std nTPM: 2.3
Median nTPM: 15.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 26.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 26.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 24.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 22.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 21.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 21.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 20.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 20.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 20.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 20.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 20.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.0
FF:10153-102I9 76 years, female 18.8
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Subiculum
nTPM: 14.3
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.8
Sample A Female 16.4
Sample B Female 13.1
Sample C Male 12.8
Sample D Male 15.0
Dorsal hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.8
Sample A Female 18.0
Sample B Female 15.0
Sample C Male 14.8
Sample D Male 15.0
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 17.4
Sample C Male 15.6
Sample D Male 14.5
Ventral hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.0
Sample A Female 15.4
Sample B Female 12.0
Sample C Male 12.7
Sample D Male 14.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.6
Samples: 4

Max nTPM: 32.8
Min nTPM: 24.7
Sample A Male 32.8
Sample B Male 30.1
Sample C Female 26.7
Sample D Female 24.7
Hippocampal formation
nTPM: 27.0
Samples: 4

Max nTPM: 31.6
Min nTPM: 24.2
Sample A Male 31.6
Sample B Male 27.2
Sample C Female 24.2
Sample D Female 24.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
69080494 Antisense, RP_050324_02_A07, Mouse strain C57BL/6J (56 days, male) 1.8

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