MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:24.0 nTPM
GTEx:12.2 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:35.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
1870 Female, age 42, unknown 26.6
1833 Male, age 53, unknown 23.7
1830 Male, age 51, unknown 23.0
2411 Female, age 72, unknown 22.3
2019 Male, age 18, unknown 21.4
2666 Male, age 74, left hemisphere 21.1
2828 Female, age 72, unknown 21.0
1827 Male, age 72, unknown 20.4
2586 Male, age 75, left hemisphere 20.4
2219 Male, age 76, both hemispheres 19.5
Dorsal raphe nucleus
nTPM: 21.3
2750 Male, age 76, both hemispheres 23.5
2016 Female, age 72, unknown 22.9
2047 Male, age 72, unknown 21.3
2298 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 18.9
Inferior colliculus
nTPM: 20.6
1890 Male, age 53, unknown 21.5
2097 Female, age 72, unknown 20.5
2849 Male, age 72, unknown 20.4
1848 Female, age 42, unknown 20.1
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 20.0
2502 Female, age 75, unknown 21.7
1947 Male, age 18, unknown 20.5
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 19.2
2850 Male, age 76, both hemispheres 22.2
1840 Male, age 53, unknown 20.1
2464 Female, age 72, unknown 17.8
1831 Male, age 72, unknown 16.5
Periaquaductal grey, lateral
nTPM: 18.2
2053 Male, age 18, unknown 20.6
2140 Male, age 76, both hemispheres 17.2
2272 Male, age 74, both hemispheres 16.7
Pretectal area
nTPM: 19.5
1817 Female, age 42, unknown 22.3
2316 Male, age 76, right hemisphere 21.8
1815 Male, age 53, unknown 21.7
2667 Female, age 75, unknown 20.5
2224 Female, age 72, unknown 20.4
2825 Male, age 18, unknown 19.8
2407 Male, age 75, both hemispheres 18.6
2007 Male, age 72, unknown 18.4
1816 Male, age 51, unknown 17.3
2273 Male, age 74, both hemispheres 17.3
1944 Female, age 72, unknown 17.1
Red nucleus
nTPM: 24.0
1865 Male, age 51, unknown 27.7
1821 Female, age 72, unknown 27.0
1904 Male, age 53, unknown 26.6
1954 Female, age 42, unknown 25.4
2227 Male, age 72, unknown 24.0
2503 Female, age 72, unknown 23.9
2769 Male, age 72, unknown 23.9
2725 Female, age 75, unknown 23.8
2588 Male, age 74, left hemisphere 23.7
2823 Male, age 76, right hemisphere 23.1
2785 Male, age 18, unknown 21.4
2584 Male, age 75, left hemisphere 17.5
Substantia nigra
nTPM: 21.4
2409 Female, age 72, unknown 26.3
1851 Male, age 51, unknown 23.4
2699 Male, age 18, unknown 23.3
1889 Female, age 72, unknown 23.0
2241 Male, age 72, unknown 21.7
1916 Female, age 42, unknown 20.2
2590 Female, age 75, unknown 20.2
2665 Male, age 74, both hemispheres 19.8
2583 Male, age 75, right hemisphere 19.4
1941 Male, age 53, unknown 16.9
Superior colliculus
nTPM: 20.7
1995 Male, age 72, unknown 26.2
1913 Female, age 42, unknown 25.5
2587 Male, age 74, left hemisphere 23.0
1895 Male, age 76, right hemisphere 21.9
1839 Male, age 51, unknown 20.6
1796 Male, age 53, unknown 19.1
2668 Female, age 75, unknown 18.9
2261 Male, age 18, unknown 17.9
2087 Female, age 72, unknown 17.5
2664 Male, age 75, both hemispheres 16.8
Ventral tegmental area
nTPM: 21.5
2223 Female, age 72, unknown 23.8
2021 Male, age 53, unknown 22.0
2410 Female, age 72, unknown 22.0
1915 Female, age 42, unknown 21.3
1942 Male, age 51, unknown 20.1
2218 Male, age 76, both hemispheres 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 139

Max nTPM: 22.4
Min nTPM: 7.9
Std nTPM: 2.7
Median nTPM: 11.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 22.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 20.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 19.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 18.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 17.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 17.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 16.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.1
FF:10158-103A5 76 years, female 67.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.7
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 22.3
Sample C Male 20.0
Sample D Male 25.1
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 18.7
Sample A Female 24.8
Sample B Female 21.8
Sample C Male 18.7
Sample D Male 21.6
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 22.0
Min nTPM: 21.2
Sample B Female 21.2
Sample C Male 22.0
Sample D Male 21.7
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 24.4
Min nTPM: 19.8
Sample A Female 21.2
Sample B Female 24.4
Sample C Male 19.8
Sample D Male 21.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 34.4
Sample A Male 35.2
Sample B Male 34.4
Sample C Female 37.0
Sample D Female 34.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
633659 Antisense, RP_040907_01_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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