MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:87.8 nTPM
GTEx:40.2 nTPM
FANTOM5:88.2 Scaled Tags Per Million
Pig:84.9 nTPM
Mouse:101.5 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.4
2586 Male, age 75, left hemisphere 104.3
2666 Male, age 74, left hemisphere 82.2
2019 Male, age 18, unknown 75.8
2828 Female, age 72, unknown 75.5
1827 Male, age 72, unknown 74.9
2411 Female, age 72, unknown 72.4
1870 Female, age 42, unknown 66.2
1833 Male, age 53, unknown 66.1
2219 Male, age 76, both hemispheres 65.8
1830 Male, age 51, unknown 60.4
Dorsal raphe nucleus
nTPM: 79.0
2047 Male, age 72, unknown 89.9
2298 Female, age 72, unknown 80.8
1828 Male, age 53, unknown 80.4
2750 Male, age 76, both hemispheres 74.1
2016 Female, age 72, unknown 69.9
Inferior colliculus
nTPM: 71.1
2097 Female, age 72, unknown 74.6
1848 Female, age 42, unknown 71.4
1890 Male, age 53, unknown 70.4
2849 Male, age 72, unknown 68.1
Median raphe nucleus
nTPM: 82.3
2220 Male, age 76, midline 82.3
Periaquaductal grey, anterior
nTPM: 79.7
1795 Male, age 51, unknown 85.1
1947 Male, age 18, unknown 78.5
2502 Female, age 75, unknown 75.6
Periaquaductal grey, dorsal
nTPM: 71.2
1840 Male, age 53, unknown 78.1
2850 Male, age 76, both hemispheres 76.7
1831 Male, age 72, unknown 66.4
2464 Female, age 72, unknown 63.6
Periaquaductal grey, lateral
nTPM: 67.0
2140 Male, age 76, both hemispheres 70.8
2053 Male, age 18, unknown 67.6
2272 Male, age 74, both hemispheres 62.6
Pretectal area
nTPM: 78.7
1817 Female, age 42, unknown 97.1
1816 Male, age 51, unknown 96.9
1944 Female, age 72, unknown 92.4
2007 Male, age 72, unknown 87.1
1815 Male, age 53, unknown 83.5
2224 Female, age 72, unknown 77.2
2667 Female, age 75, unknown 76.0
2407 Male, age 75, both hemispheres 71.8
2825 Male, age 18, unknown 66.0
2273 Male, age 74, both hemispheres 60.0
2316 Male, age 76, right hemisphere 57.8
Red nucleus
nTPM: 64.7
2584 Male, age 75, left hemisphere 74.9
2785 Male, age 18, unknown 73.8
1821 Female, age 72, unknown 71.2
2725 Female, age 75, unknown 69.7
2588 Male, age 74, left hemisphere 65.2
2769 Male, age 72, unknown 62.6
2503 Female, age 72, unknown 62.0
1954 Female, age 42, unknown 61.3
2227 Male, age 72, unknown 60.8
1865 Male, age 51, unknown 59.2
2823 Male, age 76, right hemisphere 58.0
1904 Male, age 53, unknown 57.3
Substantia nigra
nTPM: 87.8
1851 Male, age 51, unknown 98.8
1916 Female, age 42, unknown 98.2
2665 Male, age 74, both hemispheres 94.6
2241 Male, age 72, unknown 93.7
1941 Male, age 53, unknown 88.6
1889 Female, age 72, unknown 87.3
2583 Male, age 75, right hemisphere 82.1
2590 Female, age 75, unknown 80.8
2699 Male, age 18, unknown 77.7
2409 Female, age 72, unknown 76.0
Superior colliculus
nTPM: 73.7
2664 Male, age 75, both hemispheres 92.2
2087 Female, age 72, unknown 82.5
2261 Male, age 18, unknown 82.3
1796 Male, age 53, unknown 78.7
2668 Female, age 75, unknown 78.6
1839 Male, age 51, unknown 67.8
2587 Male, age 74, left hemisphere 66.2
1995 Male, age 72, unknown 63.4
1895 Male, age 76, right hemisphere 62.9
1913 Female, age 42, unknown 62.6
Ventral tegmental area
nTPM: 81.8
2410 Female, age 72, unknown 87.8
1915 Female, age 42, unknown 86.3
2218 Male, age 76, both hemispheres 83.9
2021 Male, age 53, unknown 77.9
2223 Female, age 72, unknown 77.6
1942 Male, age 51, unknown 77.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 139

Max nTPM: 81.6
Min nTPM: 12.8
Std nTPM: 12.0
Median nTPM: 40.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 73.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 65.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 59.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 59.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 58.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 58.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.2
FF:10158-103A5 76 years, female 88.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.9
Samples: 4

Max nTPM: 102.8
Min nTPM: 65.8
Sample A Female 99.3
Sample B Female 71.8
Sample C Male 102.8
Sample D Male 65.8
Midbrain
nTPM: 72.5
Samples: 4

Max nTPM: 75.6
Min nTPM: 70.0
Sample A Female 70.0
Sample B Female 74.0
Sample C Male 70.2
Sample D Male 75.6
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 77.1
Min nTPM: 62.8
Sample B Female 67.3
Sample C Male 77.1
Sample D Male 62.8
Superior colliculi
nTPM: 69.1
Samples: 4

Max nTPM: 82.9
Min nTPM: 52.3
Sample A Female 82.9
Sample B Female 52.3
Sample C Male 69.4
Sample D Male 71.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.5
Samples: 4

Max nTPM: 106.6
Min nTPM: 96.9
Sample A Male 96.9
Sample B Male 97.4
Sample C Female 105.1
Sample D Female 106.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
378550 Antisense, RP_040625_01_B04, Mouse strain C57BL/6J (56 days, male) 4.1
81599638 Antisense, RP_071203_03_F04, Mouse strain C57BL/6J (56 days, male) 2.7

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