MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.3 nTPM
HPA Brain:45.1 nTPM
GTEx:6.3 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:7.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2219 Male, age 76, both hemispheres 39.2
2019 Male, age 18, unknown 38.6
1827 Male, age 72, unknown 36.2
1830 Male, age 51, unknown 35.8
2411 Female, age 72, unknown 33.7
1833 Male, age 53, unknown 32.2
2666 Male, age 74, left hemisphere 29.8
2828 Female, age 72, unknown 28.7
1870 Female, age 42, unknown 27.3
2586 Male, age 75, left hemisphere 23.1
Dorsal raphe nucleus
nTPM: 35.0
2016 Female, age 72, unknown 38.1
2047 Male, age 72, unknown 36.2
2750 Male, age 76, both hemispheres 33.9
1828 Male, age 53, unknown 33.8
2298 Female, age 72, unknown 32.8
Inferior colliculus
nTPM: 37.9
2097 Female, age 72, unknown 40.1
1890 Male, age 53, unknown 38.5
1848 Female, age 42, unknown 36.6
2849 Male, age 72, unknown 36.4
Median raphe nucleus
nTPM: 36.1
2220 Male, age 76, midline 36.1
Periaquaductal grey, anterior
nTPM: 34.0
1947 Male, age 18, unknown 39.0
1795 Male, age 51, unknown 33.1
2502 Female, age 75, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 42.5
2850 Male, age 76, both hemispheres 51.1
1831 Male, age 72, unknown 43.0
1840 Male, age 53, unknown 39.3
2464 Female, age 72, unknown 36.6
Periaquaductal grey, lateral
nTPM: 45.1
2272 Male, age 74, both hemispheres 54.4
2140 Male, age 76, both hemispheres 47.3
2053 Male, age 18, unknown 33.5
Pretectal area
nTPM: 36.6
2273 Male, age 74, both hemispheres 49.1
1944 Female, age 72, unknown 40.6
2007 Male, age 72, unknown 38.2
1816 Male, age 51, unknown 36.9
2316 Male, age 76, right hemisphere 36.1
2825 Male, age 18, unknown 35.7
2224 Female, age 72, unknown 34.6
2667 Female, age 75, unknown 34.1
2407 Male, age 75, both hemispheres 33.7
1815 Male, age 53, unknown 33.1
1817 Female, age 42, unknown 30.9
Red nucleus
nTPM: 31.4
2584 Male, age 75, left hemisphere 36.4
2823 Male, age 76, right hemisphere 35.1
2725 Female, age 75, unknown 34.2
2588 Male, age 74, left hemisphere 33.1
1954 Female, age 42, unknown 32.8
2785 Male, age 18, unknown 31.8
1865 Male, age 51, unknown 31.3
2503 Female, age 72, unknown 30.5
1904 Male, age 53, unknown 29.4
2227 Male, age 72, unknown 28.1
2769 Male, age 72, unknown 27.6
1821 Female, age 72, unknown 26.1
Substantia nigra
nTPM: 32.5
1941 Male, age 53, unknown 39.8
2590 Female, age 75, unknown 36.9
2409 Female, age 72, unknown 35.2
2241 Male, age 72, unknown 35.1
2583 Male, age 75, right hemisphere 33.3
1889 Female, age 72, unknown 32.0
1851 Male, age 51, unknown 28.9
1916 Female, age 42, unknown 28.0
2665 Male, age 74, both hemispheres 28.0
2699 Male, age 18, unknown 27.7
Superior colliculus
nTPM: 33.2
1895 Male, age 76, right hemisphere 39.6
2087 Female, age 72, unknown 37.9
2261 Male, age 18, unknown 36.5
1913 Female, age 42, unknown 32.4
2668 Female, age 75, unknown 31.8
1796 Male, age 53, unknown 31.6
1995 Male, age 72, unknown 31.6
2587 Male, age 74, left hemisphere 31.2
1839 Male, age 51, unknown 30.7
2664 Male, age 75, both hemispheres 28.4
Ventral tegmental area
nTPM: 32.3
1942 Male, age 51, unknown 34.8
2021 Male, age 53, unknown 34.7
2223 Female, age 72, unknown 32.1
2410 Female, age 72, unknown 31.6
2218 Male, age 76, both hemispheres 30.7
1915 Female, age 42, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.3
Samples: 139

Max nTPM: 16.4
Min nTPM: 2.5
Std nTPM: 1.9
Median nTPM: 6.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 16.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 10.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 10.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 9.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 9.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 9.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 8.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 8.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 21.4
Min nTPM: 12.9
Sample A Female 14.1
Sample B Female 12.9
Sample C Male 17.5
Sample D Male 21.4
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 18.8
Min nTPM: 13.8
Sample A Female 17.7
Sample B Female 18.8
Sample C Male 13.8
Sample D Male 16.6
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 19.6
Min nTPM: 14.8
Sample B Female 18.0
Sample C Male 14.8
Sample D Male 19.6
Superior colliculi
nTPM: 13.8
Samples: 4

Max nTPM: 16.5
Min nTPM: 10.7
Sample A Female 12.7
Sample B Female 10.7
Sample C Male 16.5
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.9
Sample A Male 8.5
Sample B Male 7.1
Sample C Female 6.4
Sample D Female 5.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68341746 Antisense, RP_041207_02_B03, Mouse strain C57BL/6J (56 days, male) 0.4

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