HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		19.361
RNA expressioni
Consensus:49.5 nTPM
HPA Brain:42.4 nTPM
GTEx:49.5 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:174.1 nTPM
Mouse:243.4 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044572Antibody HPA056798Antibody CAB016733Antibody CAB034368
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells MediumNot detectedMediumMedium









HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA036636
Hippocampal formation mean intensity 19.361
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 3.255
Molecular layer of the dentate gyrus 5.474
Granular dentate gyrus 6.835
CA1 - oriens layer 8.047
CA1 - pyramidal layer 3.124
CA1 - radiatum layer 4.473
CA2 - oriens layer 4.298
CA2 - pyramidal layer 3.770
CA2 - radiatum layer 4.449
CA3 - oriens layer 5.830
CA3 - pyramidal layer 3.551
CA3 - radiatum layer 3.653
Stratum lucidum 19.361
Lacunosum moleculare 9.965
Subiculum 8.522

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Hippocampus
nTPM: 20.2
1855 Male, age 76, left hemisphere 28.8
1898 Male, age 80, left hemisphere 23.5
2529 Female, age 94, left hemisphere 20.9
1911 Female, age 85, right hemisphere 20.4
2621 Female, age 67, right hemisphere 19.1
2148 Female, age 91, left hemisphere 8.4
Dentate gyrus
nTPM: 19.8
2010 Male, age 76, both hemispheres 37.7
2246 Female, age 85, both hemispheres 37.7
1927 Female, age 91, both hemispheres 15.4
2530 Female, age 94, left hemisphere 9.7
2528 Male, age 74, both hemispheres 9.0
2531 Female, age 67, both hemispheres 9.0
Entorhinal gyrus
nTPM: 41.3
2764 Male, age 80, right hemisphere 81.0
1787 Male, age 76, left hemisphere 69.9
1938 Female, age 85, left hemisphere 35.6
2686 Male, age 75, right hemisphere 29.1
2613 Female, age 94, left hemisphere 19.5
2117 Female, age 91, right hemisphere 12.6
Hippocampus, CA1
nTPM: 18.9
2045 Male, age 76, both hemispheres 42.5
2082 Female, age 91, right hemisphere 15.2
2749 Male, age 80, left hemisphere 15.0
1873 Female, age 85, both hemispheres 13.8
2527 Male, age 74, both hemispheres 7.9
Hippocampus, CA2
nTPM: 21.9
1892 Male, age 76, both hemispheres 50.1
1940 Female, age 85, left hemisphere 48.1
1963 Male, age 80, left hemisphere 10.2
2437 Female, age 94, left hemisphere 8.9
2113 Female, age 91, right hemisphere 8.4
2249 Male, age 74, both hemispheres 5.7
Hippocampus, CA3
nTPM: 17.2
1867 Male, age 76, both hemispheres 45.7
1891 Female, age 85, both hemispheres 14.9
2620 Female, age 94, left hemisphere 13.2
2137 Male, age 80, left hemisphere 11.9
2861 Female, age 67, both hemispheres 10.9
2436 Male, age 74, both hemispheres 6.8
Parahippocampal cortex
nTPM: 31.5
1850 Male, age 80, both hemispheres 67.4
2532 Female, age 72, left hemisphere 54.6
2245 Female, age 91, both hemispheres 36.1
1933 Female, age 85, both hemispheres 34.0
1990 Female, age 91, right hemisphere 26.1
2250 Female, age 67, right hemisphere 24.8
2622 Female, age 67, right hemisphere 24.4
2018 Male, age 76, both hemispheres 21.3
2693 Female, age 94, both hemispheres 13.1
2692 Male, age 74, both hemispheres 12.9
Perirhinal gyrus
nTPM: 42.4
2848 Male, age 76, right hemisphere 69.3
1847 Female, age 91, left hemisphere 47.2
1794 Male, age 80, right hemisphere 45.1
2521 Female, age 94, right hemisphere 25.6
1841 Female, age 85, right hemisphere 24.9
Subiculum
nTPM: 26.6
1901 Male, age 80, both hemispheres 48.5
2042 Male, age 76, both hemispheres 42.3
2438 Female, age 94, left hemisphere 30.2
1977 Female, age 85, both hemispheres 22.6
2619 Male, age 74, both hemispheres 11.2
2729 Female, age 91, right hemisphere 4.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.5
Samples: 197

Max nTPM: 399.8
Min nTPM: 4.8
Std nTPM: 45.8
Median nTPM: 37.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 399.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 204.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 195.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 173.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 164.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 155.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 155.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 142.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 138.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 137.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 131.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.9
FF:10169-103B7 60 years, female 102.8
FF:10153-102I9 76 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 174.1
Pig sample Sample description nTPM
Subiculum
nTPM: 99.9
Samples: 4

Max nTPM: 120.9
Min nTPM: 89.6
Sample A Female 89.6
Sample B Female 98.9
Sample C Male 90.2
Sample D Male 120.9
Dorsal hippocampus
nTPM: 156.1
Samples: 4

Max nTPM: 261.1
Min nTPM: 82.7
Sample A Female 163.7
Sample B Female 116.8
Sample C Male 261.1
Sample D Male 82.7
Entorhinal cortex
nTPM: 174.2
Samples: 4

Max nTPM: 244.3
Min nTPM: 131.7
Sample A Female 181.0
Sample B Female 139.6
Sample C Male 244.3
Sample D Male 131.7
Ventral hippocampus
nTPM: 146.9
Samples: 4

Max nTPM: 194.9
Min nTPM: 93.2
Sample A Female 155.2
Sample B Female 93.2
Sample C Male 194.9
Sample D Male 144.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 243.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 243.5
Samples: 4

Max nTPM: 280.9
Min nTPM: 213.7
Sample A Male 253.4
Sample B Male 280.9
Sample C Female 225.8
Sample D Female 213.7
Hippocampal formation
nTPM: 189.1
Samples: 4

Max nTPM: 200.6
Min nTPM: 178.6
Sample A Male 200.6
Sample B Male 188.8
Sample C Female 178.6
Sample D Female 188.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
100055044 Antisense, RP_080228_07_C09, Mouse strain C57BL/6J (56 days, male) 3.3
100055063 Antisense, RP_080228_07_C09, Mouse strain C57BL/6J (56 days, male) 2.8
100055050 Antisense, RP_080228_07_C09, Mouse strain C57BL/6J (56 days, male) 2.4
717 Antisense, RP_Baylor_103333, Mouse strain C57BL/6J (56 days, male) 1.9
718 Antisense, RP_Baylor_103333, Mouse strain C57BL/6J (56 days, male) 1.8

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