HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:19.8 nTPM
GTEx:9.1 nTPM
FANTOM5:80.8 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:65.5 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019708
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.8
Sample id Sample description nTPM
Hippocampus
nTPM: 18.3
1898 Male, age 80, left hemisphere 20.3
1911 Female, age 85, right hemisphere 18.6
1855 Male, age 76, left hemisphere 17.8
2529 Female, age 94, left hemisphere 17.8
2621 Female, age 67, right hemisphere 17.8
2148 Female, age 91, left hemisphere 17.5
Dentate gyrus
nTPM: 18.5
2010 Male, age 76, both hemispheres 20.2
2528 Male, age 74, both hemispheres 19.5
2530 Female, age 94, left hemisphere 18.6
1927 Female, age 91, both hemispheres 18.5
2246 Female, age 85, both hemispheres 17.7
2531 Female, age 67, both hemispheres 16.7
Entorhinal gyrus
nTPM: 18.9
2117 Female, age 91, right hemisphere 21.0
1938 Female, age 85, left hemisphere 20.1
2764 Male, age 80, right hemisphere 19.7
1787 Male, age 76, left hemisphere 18.0
2613 Female, age 94, left hemisphere 17.2
2686 Male, age 75, right hemisphere 17.2
Hippocampus, CA1
nTPM: 19.4
2749 Male, age 80, left hemisphere 22.2
1873 Female, age 85, both hemispheres 20.8
2082 Female, age 91, right hemisphere 18.6
2527 Male, age 74, both hemispheres 18.6
2045 Male, age 76, both hemispheres 16.9
Hippocampus, CA2
nTPM: 18.9
1963 Male, age 80, left hemisphere 20.2
2249 Male, age 74, both hemispheres 19.7
2113 Female, age 91, right hemisphere 19.0
1892 Male, age 76, both hemispheres 18.9
1940 Female, age 85, left hemisphere 18.9
2437 Female, age 94, left hemisphere 16.6
Hippocampus, CA3
nTPM: 18.5
1891 Female, age 85, both hemispheres 20.6
2137 Male, age 80, left hemisphere 20.2
1867 Male, age 76, both hemispheres 18.6
2620 Female, age 94, left hemisphere 18.4
2436 Male, age 74, both hemispheres 17.6
2861 Female, age 67, both hemispheres 15.7
Parahippocampal cortex
nTPM: 18.8
1850 Male, age 80, both hemispheres 21.1
1990 Female, age 91, right hemisphere 19.8
2250 Female, age 67, right hemisphere 19.5
1933 Female, age 85, both hemispheres 19.3
2532 Female, age 72, left hemisphere 18.7
2018 Male, age 76, both hemispheres 18.6
2693 Female, age 94, both hemispheres 18.3
2245 Female, age 91, both hemispheres 18.2
2692 Male, age 74, both hemispheres 18.1
2622 Female, age 67, right hemisphere 16.4
Perirhinal gyrus
nTPM: 19.8
1841 Female, age 85, right hemisphere 21.7
2848 Male, age 76, right hemisphere 20.1
1794 Male, age 80, right hemisphere 19.9
1847 Female, age 91, left hemisphere 18.9
2521 Female, age 94, right hemisphere 18.4
Subiculum
nTPM: 19.6
1977 Female, age 85, both hemispheres 20.7
2042 Male, age 76, both hemispheres 20.4
1901 Male, age 80, both hemispheres 20.2
2729 Female, age 91, right hemisphere 19.7
2619 Male, age 74, both hemispheres 18.9
2438 Female, age 94, left hemisphere 17.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.1
Samples: 197

Max nTPM: 14.0
Min nTPM: 6.3
Std nTPM: 1.1
Median nTPM: 9.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 13.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 11.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 11.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 11.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 11.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 10.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 10.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 10.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 10.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 10.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 80.8
FF:10169-103B7 60 years, female 96.5
FF:10153-102I9 76 years, female 65.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.7
Pig sample Sample description nTPM
Subiculum
nTPM: 21.7
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.3
Sample A Female 25.1
Sample B Female 22.2
Sample C Male 20.0
Sample D Male 19.3
Dorsal hippocampus
nTPM: 25.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 19.8
Sample A Female 29.8
Sample B Female 26.5
Sample C Male 26.6
Sample D Male 19.8
Entorhinal cortex
nTPM: 20.9
Samples: 4

Max nTPM: 26.8
Min nTPM: 16.4
Sample A Female 19.8
Sample B Female 26.8
Sample C Male 20.7
Sample D Male 16.4
Ventral hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 22.8
Min nTPM: 21.3
Sample A Female 22.8
Sample B Female 21.3
Sample C Male 22.7
Sample D Male 22.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 58.5
Sample A Male 59.8
Sample B Male 59.2
Sample C Female 61.8
Sample D Female 58.5
Hippocampal formation
nTPM: 65.6
Samples: 4

Max nTPM: 73.3
Min nTPM: 61.8
Sample A Male 73.3
Sample B Male 63.3
Sample C Female 63.8
Sample D Female 61.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
69838604 Antisense, RP_050310_02_B12, Mouse strain C57BL/6J (56 days, male) 4.9
74819686 Antisense, RP_060315_02_H02, Mouse strain C57BL/6J (56 days, male) 3.0

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