MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:200.0 nTPM
HPA Brain:129.4 nTPM
GTEx:200.0 nTPM
FANTOM5:235.7 Scaled Tags Per Million
Pig:136.5 nTPM
Mouse:220.3 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.2
2019 Male, age 18, unknown 128.7
1827 Male, age 72, unknown 126.1
2411 Female, age 72, unknown 121.9
1870 Female, age 42, unknown 115.4
2828 Female, age 72, unknown 112.1
1833 Male, age 53, unknown 111.0
2219 Male, age 76, both hemispheres 110.2
1830 Male, age 51, unknown 108.7
2666 Male, age 74, left hemisphere 105.4
2586 Male, age 75, left hemisphere 102.0
Dorsal raphe nucleus
nTPM: 115.2
2298 Female, age 72, unknown 136.0
2750 Male, age 76, both hemispheres 128.7
2047 Male, age 72, unknown 109.0
1828 Male, age 53, unknown 108.4
2016 Female, age 72, unknown 94.0
Inferior colliculus
nTPM: 107.8
2097 Female, age 72, unknown 115.4
1890 Male, age 53, unknown 107.5
1848 Female, age 42, unknown 105.5
2849 Male, age 72, unknown 102.8
Median raphe nucleus
nTPM: 129.4
2220 Male, age 76, midline 129.4
Periaquaductal grey, anterior
nTPM: 115.6
1947 Male, age 18, unknown 119.7
2502 Female, age 75, unknown 115.7
1795 Male, age 51, unknown 111.3
Periaquaductal grey, dorsal
nTPM: 92.3
1840 Male, age 53, unknown 95.9
1831 Male, age 72, unknown 95.8
2850 Male, age 76, both hemispheres 91.6
2464 Female, age 72, unknown 86.1
Periaquaductal grey, lateral
nTPM: 98.7
2272 Male, age 74, both hemispheres 116.4
2053 Male, age 18, unknown 91.2
2140 Male, age 76, both hemispheres 88.4
Pretectal area
nTPM: 115.2
2007 Male, age 72, unknown 139.2
1817 Female, age 42, unknown 134.2
1944 Female, age 72, unknown 133.2
1816 Male, age 51, unknown 131.4
1815 Male, age 53, unknown 121.4
2273 Male, age 74, both hemispheres 107.8
2224 Female, age 72, unknown 105.1
2407 Male, age 75, both hemispheres 102.5
2667 Female, age 75, unknown 101.3
2825 Male, age 18, unknown 98.3
2316 Male, age 76, right hemisphere 93.2
Red nucleus
nTPM: 121.2
1821 Female, age 72, unknown 134.5
2785 Male, age 18, unknown 133.6
2503 Female, age 72, unknown 128.1
1865 Male, age 51, unknown 123.7
2725 Female, age 75, unknown 123.7
2823 Male, age 76, right hemisphere 119.4
1954 Female, age 42, unknown 119.2
1904 Male, age 53, unknown 119.0
2227 Male, age 72, unknown 114.8
2584 Male, age 75, left hemisphere 114.0
2588 Male, age 74, left hemisphere 112.5
2769 Male, age 72, unknown 112.4
Substantia nigra
nTPM: 125.7
1916 Female, age 42, unknown 170.7
1941 Male, age 53, unknown 140.1
1851 Male, age 51, unknown 133.7
1889 Female, age 72, unknown 132.9
2590 Female, age 75, unknown 128.2
2241 Male, age 72, unknown 125.5
2699 Male, age 18, unknown 111.3
2583 Male, age 75, right hemisphere 109.6
2665 Male, age 74, both hemispheres 108.5
2409 Female, age 72, unknown 97.0
Superior colliculus
nTPM: 109.5
2087 Female, age 72, unknown 123.5
2587 Male, age 74, left hemisphere 118.6
2261 Male, age 18, unknown 117.3
2668 Female, age 75, unknown 116.3
1796 Male, age 53, unknown 116.1
1895 Male, age 76, right hemisphere 107.1
1913 Female, age 42, unknown 106.5
1839 Male, age 51, unknown 104.5
1995 Male, age 72, unknown 96.0
2664 Male, age 75, both hemispheres 89.3
Ventral tegmental area
nTPM: 117.5
2218 Male, age 76, both hemispheres 131.8
2410 Female, age 72, unknown 127.4
1915 Female, age 42, unknown 127.3
2223 Female, age 72, unknown 117.0
1942 Male, age 51, unknown 104.4
2021 Male, age 53, unknown 96.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 200.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 200.0
Samples: 139

Max nTPM: 337.5
Min nTPM: 115.5
Std nTPM: 43.3
Median nTPM: 195.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 337.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 322.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 313.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 311.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 297.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 293.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 281.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 280.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 277.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 276.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 271.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 235.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 235.7
FF:10158-103A5 76 years, female 235.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 136.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.6
Samples: 4

Max nTPM: 124.1
Min nTPM: 74.9
Sample A Female 124.1
Sample B Female 76.9
Sample C Male 106.5
Sample D Male 74.9
Midbrain
nTPM: 115.7
Samples: 4

Max nTPM: 138.2
Min nTPM: 91.4
Sample A Female 114.3
Sample B Female 91.4
Sample C Male 138.2
Sample D Male 118.9
Periaqueductal gray
nTPM: 87.3
Samples: 3

Max nTPM: 100.5
Min nTPM: 79.3
Sample B Female 82.2
Sample C Male 100.5
Sample D Male 79.3
Superior colliculi
nTPM: 136.5
Samples: 4

Max nTPM: 154.2
Min nTPM: 117.0
Sample A Female 139.1
Sample B Female 135.7
Sample C Male 154.2
Sample D Male 117.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 220.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.3
Samples: 4

Max nTPM: 231.0
Min nTPM: 214.3
Sample A Male 231.0
Sample B Male 219.2
Sample C Female 214.3
Sample D Female 216.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
69838610 Antisense, RP_050310_02_C09, Mouse strain C57BL/6J (56 days, male) 9.9
74819690 Antisense, RP_060315_02_H06, Mouse strain C57BL/6J (56 days, male) 9.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org