MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA Brain:28.0 nTPM
GTEx:8.5 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:21.8 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.9
2219 Male, age 76, both hemispheres 30.8
2019 Male, age 18, unknown 29.9
1870 Female, age 42, unknown 27.9
1833 Male, age 53, unknown 27.7
1830 Male, age 51, unknown 27.4
1827 Male, age 72, unknown 26.2
2666 Male, age 74, left hemisphere 26.2
2411 Female, age 72, unknown 25.8
2828 Female, age 72, unknown 24.8
2586 Male, age 75, left hemisphere 22.6
Dorsal raphe nucleus
nTPM: 25.7
2016 Female, age 72, unknown 26.8
2298 Female, age 72, unknown 25.7
1828 Male, age 53, unknown 25.4
2750 Male, age 76, both hemispheres 25.4
2047 Male, age 72, unknown 25.0
Inferior colliculus
nTPM: 27.6
1890 Male, age 53, unknown 28.3
2849 Male, age 72, unknown 27.9
2097 Female, age 72, unknown 27.5
1848 Female, age 42, unknown 26.6
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Periaquaductal grey, anterior
nTPM: 25.4
1947 Male, age 18, unknown 27.3
2502 Female, age 75, unknown 26.4
1795 Male, age 51, unknown 22.3
Periaquaductal grey, dorsal
nTPM: 25.0
2850 Male, age 76, both hemispheres 27.5
1831 Male, age 72, unknown 24.8
1840 Male, age 53, unknown 24.8
2464 Female, age 72, unknown 22.9
Periaquaductal grey, lateral
nTPM: 26.3
2140 Male, age 76, both hemispheres 28.4
2272 Male, age 74, both hemispheres 26.0
2053 Male, age 18, unknown 24.6
Pretectal area
nTPM: 27.8
2407 Male, age 75, both hemispheres 35.8
1817 Female, age 42, unknown 29.0
1944 Female, age 72, unknown 28.8
2667 Female, age 75, unknown 28.5
2007 Male, age 72, unknown 28.3
1815 Male, age 53, unknown 27.1
1816 Male, age 51, unknown 26.9
2273 Male, age 74, both hemispheres 26.8
2224 Female, age 72, unknown 26.0
2316 Male, age 76, right hemisphere 24.8
2825 Male, age 18, unknown 23.9
Red nucleus
nTPM: 27.6
1865 Male, age 51, unknown 29.4
2785 Male, age 18, unknown 29.1
1821 Female, age 72, unknown 28.8
1904 Male, age 53, unknown 28.0
2823 Male, age 76, right hemisphere 27.8
2503 Female, age 72, unknown 27.7
2725 Female, age 75, unknown 27.5
2769 Male, age 72, unknown 27.4
1954 Female, age 42, unknown 27.2
2588 Male, age 74, left hemisphere 26.4
2584 Male, age 75, left hemisphere 26.3
2227 Male, age 72, unknown 25.5
Substantia nigra
nTPM: 27.4
2241 Male, age 72, unknown 30.6
1889 Female, age 72, unknown 29.0
1851 Male, age 51, unknown 28.4
1916 Female, age 42, unknown 28.3
2665 Male, age 74, both hemispheres 27.4
2409 Female, age 72, unknown 26.9
1941 Male, age 53, unknown 26.6
2699 Male, age 18, unknown 26.3
2583 Male, age 75, right hemisphere 25.7
2590 Female, age 75, unknown 25.1
Superior colliculus
nTPM: 27.2
1839 Male, age 51, unknown 29.5
1913 Female, age 42, unknown 29.0
2087 Female, age 72, unknown 28.1
1895 Male, age 76, right hemisphere 27.7
2668 Female, age 75, unknown 27.6
2261 Male, age 18, unknown 27.5
1995 Male, age 72, unknown 27.0
1796 Male, age 53, unknown 25.6
2587 Male, age 74, left hemisphere 25.5
2664 Male, age 75, both hemispheres 24.6
Ventral tegmental area
nTPM: 26.0
2223 Female, age 72, unknown 27.6
2021 Male, age 53, unknown 27.4
2218 Male, age 76, both hemispheres 27.1
1915 Female, age 42, unknown 25.5
1942 Male, age 51, unknown 24.7
2410 Female, age 72, unknown 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.5
Samples: 139

Max nTPM: 12.9
Min nTPM: 3.7
Std nTPM: 1.7
Median nTPM: 8.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 12.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 12.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 12.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 11.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 11.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 11.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 11.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 11.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.0
FF:10158-103A5 76 years, female 40.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 11.7
Sample A Female 20.0
Sample B Female 16.7
Sample C Male 22.6
Sample D Male 11.7
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 13.5
Sample A Female 14.3
Sample B Female 14.8
Sample C Male 13.5
Sample D Male 14.4
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 14.8
Min nTPM: 12.7
Sample B Female 13.0
Sample C Male 14.8
Sample D Male 12.7
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 15.3
Min nTPM: 14.0
Sample A Female 14.1
Sample B Female 14.0
Sample C Male 15.3
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 22.2
Min nTPM: 21.3
Sample A Male 22.1
Sample B Male 22.2
Sample C Female 21.6
Sample D Female 21.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
70430744 Antisense, RP_050614_02_A01, Mouse strain C57BL/6J (56 days, male) 3.3

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