MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:60.1 nTPM
GTEx:12.5 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:12.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.2
2828 Female, age 72, unknown 61.4
2586 Male, age 75, left hemisphere 49.8
1827 Male, age 72, unknown 39.1
1870 Female, age 42, unknown 39.1
1833 Male, age 53, unknown 35.0
2411 Female, age 72, unknown 34.0
1830 Male, age 51, unknown 30.3
2019 Male, age 18, unknown 27.6
2666 Male, age 74, left hemisphere 23.6
2219 Male, age 76, both hemispheres 22.2
Dorsal raphe nucleus
nTPM: 50.9
2298 Female, age 72, unknown 79.9
2016 Female, age 72, unknown 68.6
1828 Male, age 53, unknown 43.0
2047 Male, age 72, unknown 39.4
2750 Male, age 76, both hemispheres 23.5
Inferior colliculus
nTPM: 35.1
2097 Female, age 72, unknown 38.5
1848 Female, age 42, unknown 37.5
2849 Male, age 72, unknown 34.8
1890 Male, age 53, unknown 29.6
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 44.3
1795 Male, age 51, unknown 53.2
2502 Female, age 75, unknown 46.7
1947 Male, age 18, unknown 33.1
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 56.2
1831 Male, age 72, unknown 48.6
2464 Female, age 72, unknown 43.8
2850 Male, age 76, both hemispheres 40.5
Periaquaductal grey, lateral
nTPM: 60.1
2053 Male, age 18, unknown 72.1
2140 Male, age 76, both hemispheres 54.6
2272 Male, age 74, both hemispheres 53.5
Pretectal area
nTPM: 42.6
2273 Male, age 74, both hemispheres 84.1
2224 Female, age 72, unknown 51.9
2825 Male, age 18, unknown 48.0
2407 Male, age 75, both hemispheres 47.8
2316 Male, age 76, right hemisphere 43.8
2667 Female, age 75, unknown 39.3
1944 Female, age 72, unknown 35.3
1815 Male, age 53, unknown 33.5
1816 Male, age 51, unknown 31.6
1817 Female, age 42, unknown 28.3
2007 Male, age 72, unknown 24.9
Red nucleus
nTPM: 33.4
2503 Female, age 72, unknown 43.4
2227 Male, age 72, unknown 41.8
2769 Male, age 72, unknown 39.3
2725 Female, age 75, unknown 36.0
1954 Female, age 42, unknown 34.8
1904 Male, age 53, unknown 32.4
1865 Male, age 51, unknown 31.4
1821 Female, age 72, unknown 30.8
2584 Male, age 75, left hemisphere 29.3
2588 Male, age 74, left hemisphere 28.5
2823 Male, age 76, right hemisphere 27.9
2785 Male, age 18, unknown 25.5
Substantia nigra
nTPM: 35.7
2699 Male, age 18, unknown 54.9
2583 Male, age 75, right hemisphere 40.1
1916 Female, age 42, unknown 39.4
1851 Male, age 51, unknown 38.4
2590 Female, age 75, unknown 37.5
2409 Female, age 72, unknown 34.8
1889 Female, age 72, unknown 29.5
1941 Male, age 53, unknown 28.4
2665 Male, age 74, both hemispheres 27.6
2241 Male, age 72, unknown 26.5
Superior colliculus
nTPM: 40.4
1995 Male, age 72, unknown 56.1
2664 Male, age 75, both hemispheres 54.7
1796 Male, age 53, unknown 45.1
1913 Female, age 42, unknown 41.8
1839 Male, age 51, unknown 39.8
2587 Male, age 74, left hemisphere 39.0
2087 Female, age 72, unknown 36.8
2261 Male, age 18, unknown 36.6
2668 Female, age 75, unknown 32.0
1895 Male, age 76, right hemisphere 21.9
Ventral tegmental area
nTPM: 39.3
2021 Male, age 53, unknown 52.6
1915 Female, age 42, unknown 47.9
1942 Male, age 51, unknown 42.7
2410 Female, age 72, unknown 35.4
2218 Male, age 76, both hemispheres 30.3
2223 Female, age 72, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 39.7
Min nTPM: 2.1
Std nTPM: 5.6
Median nTPM: 11.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 39.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 29.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 28.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 27.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 23.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 22.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 21.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 21.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 21.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 33.4
Min nTPM: 26.4
Sample A Female 28.6
Sample B Female 33.4
Sample C Male 26.4
Sample D Male 31.2
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 75.0
Min nTPM: 17.4
Sample A Female 75.0
Sample B Female 25.6
Sample C Male 23.1
Sample D Male 17.4
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 29.8
Min nTPM: 27.6
Sample B Female 27.6
Sample C Male 29.8
Sample D Male 29.8
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.9
Sample A Female 26.3
Sample B Female 25.8
Sample C Male 23.9
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 12.4
Min nTPM: 11.5
Sample A Male 11.5
Sample B Male 12.3
Sample C Female 11.8
Sample D Female 12.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
671249 Antisense, RP_040914_02_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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