MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.2 nTPM
HPA Brain:207.2 nTPM
GTEx:11.2 nTPM
FANTOM5:150.4 Scaled Tags Per Million
Pig:139.5 nTPM
Mouse:21.2 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 207.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 184.3
2586 Male, age 75, left hemisphere 265.6
2828 Female, age 72, unknown 219.3
2219 Male, age 76, both hemispheres 201.7
1827 Male, age 72, unknown 181.7
2019 Male, age 18, unknown 176.1
1833 Male, age 53, unknown 171.2
2666 Male, age 74, left hemisphere 165.5
1870 Female, age 42, unknown 160.4
1830 Male, age 51, unknown 154.8
2411 Female, age 72, unknown 146.8
Dorsal raphe nucleus
nTPM: 185.5
2047 Male, age 72, unknown 211.9
2016 Female, age 72, unknown 202.3
1828 Male, age 53, unknown 199.7
2298 Female, age 72, unknown 179.8
2750 Male, age 76, both hemispheres 133.6
Inferior colliculus
nTPM: 203.3
1848 Female, age 42, unknown 217.9
2849 Male, age 72, unknown 211.4
1890 Male, age 53, unknown 199.4
2097 Female, age 72, unknown 184.6
Median raphe nucleus
nTPM: 147.4
2220 Male, age 76, midline 147.4
Periaquaductal grey, anterior
nTPM: 207.2
2502 Female, age 75, unknown 241.3
1795 Male, age 51, unknown 205.1
1947 Male, age 18, unknown 175.2
Periaquaductal grey, dorsal
nTPM: 196.0
1840 Male, age 53, unknown 227.4
2464 Female, age 72, unknown 190.6
2850 Male, age 76, both hemispheres 183.6
1831 Male, age 72, unknown 182.6
Periaquaductal grey, lateral
nTPM: 189.4
2140 Male, age 76, both hemispheres 217.6
2053 Male, age 18, unknown 193.5
2272 Male, age 74, both hemispheres 157.0
Pretectal area
nTPM: 197.4
1817 Female, age 42, unknown 220.4
1816 Male, age 51, unknown 219.2
1944 Female, age 72, unknown 219.1
2667 Female, age 75, unknown 208.9
2273 Male, age 74, both hemispheres 198.6
2007 Male, age 72, unknown 188.0
2316 Male, age 76, right hemisphere 186.8
2407 Male, age 75, both hemispheres 184.1
1815 Male, age 53, unknown 183.6
2825 Male, age 18, unknown 182.3
2224 Female, age 72, unknown 180.4
Red nucleus
nTPM: 181.3
1954 Female, age 42, unknown 199.8
2769 Male, age 72, unknown 199.5
2503 Female, age 72, unknown 196.1
2227 Male, age 72, unknown 193.8
2588 Male, age 74, left hemisphere 189.2
2584 Male, age 75, left hemisphere 185.2
1821 Female, age 72, unknown 177.3
1904 Male, age 53, unknown 175.3
1865 Male, age 51, unknown 171.7
2785 Male, age 18, unknown 170.4
2725 Female, age 75, unknown 168.2
2823 Male, age 76, right hemisphere 148.9
Substantia nigra
nTPM: 193.2
2699 Male, age 18, unknown 237.6
2665 Male, age 74, both hemispheres 217.8
1916 Female, age 42, unknown 216.7
2583 Male, age 75, right hemisphere 198.9
2590 Female, age 75, unknown 193.0
1851 Male, age 51, unknown 192.3
1889 Female, age 72, unknown 189.6
2409 Female, age 72, unknown 173.8
2241 Male, age 72, unknown 156.2
1941 Male, age 53, unknown 155.5
Superior colliculus
nTPM: 186.0
2664 Male, age 75, both hemispheres 231.1
2087 Female, age 72, unknown 212.1
1796 Male, age 53, unknown 202.0
2261 Male, age 18, unknown 199.5
1839 Male, age 51, unknown 195.9
1995 Male, age 72, unknown 176.9
2587 Male, age 74, left hemisphere 168.6
1913 Female, age 42, unknown 163.9
2668 Female, age 75, unknown 157.6
1895 Male, age 76, right hemisphere 152.7
Ventral tegmental area
nTPM: 170.3
1915 Female, age 42, unknown 187.3
2021 Male, age 53, unknown 178.9
2410 Female, age 72, unknown 176.8
1942 Male, age 51, unknown 176.4
2223 Female, age 72, unknown 154.9
2218 Male, age 76, both hemispheres 147.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.2
Samples: 139

Max nTPM: 31.0
Min nTPM: 1.5
Std nTPM: 5.5
Median nTPM: 10.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 30.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 28.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 24.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 21.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 20.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 19.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 19.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 18.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.4
FF:10158-103A5 76 years, female 150.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 139.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 126.3
Samples: 4

Max nTPM: 152.4
Min nTPM: 115.0
Sample A Female 118.7
Sample B Female 152.4
Sample C Male 118.9
Sample D Male 115.0
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 133.6
Min nTPM: 95.1
Sample A Female 133.6
Sample B Female 97.2
Sample C Male 129.4
Sample D Male 95.1
Periaqueductal gray
nTPM: 104.1
Samples: 3

Max nTPM: 117.9
Min nTPM: 87.1
Sample B Female 107.2
Sample C Male 117.9
Sample D Male 87.1
Superior colliculi
nTPM: 139.5
Samples: 4

Max nTPM: 199.7
Min nTPM: 102.9
Sample A Female 145.3
Sample B Female 199.7
Sample C Male 110.0
Sample D Male 102.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 24.5
Min nTPM: 16.8
Sample A Male 16.8
Sample B Male 23.1
Sample C Female 20.4
Sample D Female 24.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69736244 Antisense, RP_050503_04_D06, Mouse strain C57BL/6J (56 days, male) 5.8

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