MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:33.5 nTPM
GTEx:10.8 nTPM
FANTOM5:50.1 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:12.4 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
2828 Female, age 72, unknown 38.7
2019 Male, age 18, unknown 34.9
2586 Male, age 75, left hemisphere 30.7
2666 Male, age 74, left hemisphere 27.1
1827 Male, age 72, unknown 26.4
2411 Female, age 72, unknown 22.2
1830 Male, age 51, unknown 21.7
1870 Female, age 42, unknown 21.2
1833 Male, age 53, unknown 20.1
2219 Male, age 76, both hemispheres 13.5
Dorsal raphe nucleus
nTPM: 29.9
2016 Female, age 72, unknown 36.0
2298 Female, age 72, unknown 33.6
1828 Male, age 53, unknown 32.5
2047 Male, age 72, unknown 25.8
2750 Male, age 76, both hemispheres 21.8
Inferior colliculus
nTPM: 19.8
2097 Female, age 72, unknown 23.7
1890 Male, age 53, unknown 20.3
1848 Female, age 42, unknown 17.9
2849 Male, age 72, unknown 17.3
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Periaquaductal grey, anterior
nTPM: 27.6
1795 Male, age 51, unknown 32.6
1947 Male, age 18, unknown 25.2
2502 Female, age 75, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 29.9
1831 Male, age 72, unknown 36.8
2850 Male, age 76, both hemispheres 30.4
1840 Male, age 53, unknown 27.1
2464 Female, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 33.5
2140 Male, age 76, both hemispheres 35.0
2272 Male, age 74, both hemispheres 34.6
2053 Male, age 18, unknown 30.8
Pretectal area
nTPM: 30.6
1817 Female, age 42, unknown 40.3
1816 Male, age 51, unknown 39.8
2273 Male, age 74, both hemispheres 38.2
1815 Male, age 53, unknown 36.4
1944 Female, age 72, unknown 34.9
2667 Female, age 75, unknown 28.8
2224 Female, age 72, unknown 27.2
2007 Male, age 72, unknown 27.1
2407 Male, age 75, both hemispheres 21.6
2316 Male, age 76, right hemisphere 21.1
2825 Male, age 18, unknown 20.6
Red nucleus
nTPM: 32.7
2725 Female, age 75, unknown 47.5
2503 Female, age 72, unknown 43.7
1821 Female, age 72, unknown 37.6
2823 Male, age 76, right hemisphere 34.2
2785 Male, age 18, unknown 33.5
1865 Male, age 51, unknown 32.3
1904 Male, age 53, unknown 30.6
1954 Female, age 42, unknown 27.9
2588 Male, age 74, left hemisphere 27.5
2584 Male, age 75, left hemisphere 27.4
2227 Male, age 72, unknown 25.2
2769 Male, age 72, unknown 24.9
Substantia nigra
nTPM: 23.8
1851 Male, age 51, unknown 28.5
2583 Male, age 75, right hemisphere 27.6
1889 Female, age 72, unknown 25.8
2590 Female, age 75, unknown 25.3
2409 Female, age 72, unknown 24.2
2241 Male, age 72, unknown 23.0
1941 Male, age 53, unknown 21.6
2699 Male, age 18, unknown 21.2
1916 Female, age 42, unknown 20.8
2665 Male, age 74, both hemispheres 20.3
Superior colliculus
nTPM: 29.4
1995 Male, age 72, unknown 49.6
1913 Female, age 42, unknown 39.3
2261 Male, age 18, unknown 35.7
2087 Female, age 72, unknown 34.8
1796 Male, age 53, unknown 26.6
2664 Male, age 75, both hemispheres 26.6
2587 Male, age 74, left hemisphere 24.5
1895 Male, age 76, right hemisphere 20.7
2668 Female, age 75, unknown 19.9
1839 Male, age 51, unknown 16.7
Ventral tegmental area
nTPM: 25.5
2021 Male, age 53, unknown 29.3
2410 Female, age 72, unknown 27.3
1915 Female, age 42, unknown 26.9
2223 Female, age 72, unknown 25.6
1942 Male, age 51, unknown 24.8
2218 Male, age 76, both hemispheres 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.8
Samples: 139

Max nTPM: 33.7
Min nTPM: 3.4
Std nTPM: 3.9
Median nTPM: 10.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 24.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 19.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 18.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 18.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 18.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 18.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 17.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 17.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 17.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.1
FF:10158-103A5 76 years, female 50.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 4.9
Sample C Male 5.7
Sample D Male 8.0
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 21.2
Min nTPM: 2.9
Sample A Female 21.2
Sample B Female 2.9
Sample C Male 7.3
Sample D Male 4.6
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 5.5
Min nTPM: 3.3
Sample B Female 3.3
Sample C Male 3.5
Sample D Male 5.5
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 7.2
Sample C Male 9.6
Sample D Male 7.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.5
Sample A Male 12.5
Sample B Male 13.3
Sample C Female 11.5
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
1399 Antisense, RP_Baylor_102957, Mouse strain C57BL/6J (56 days, male) 1.1
1400 Antisense, RP_Baylor_102957, Mouse strain C57BL/6J (56 days, male) 0.2

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