HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:53.5 nTPM
GTEx:22.3 nTPM
FANTOM5:241.8 Scaled Tags Per Million
Pig:95.9 nTPM
Mouse:141.7 nTPM
Allen mouse:7.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011315
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Hippocampus
nTPM: 43.8
1898 Male, age 80, left hemisphere 58.7
1855 Male, age 76, left hemisphere 45.3
2529 Female, age 94, left hemisphere 45.0
2621 Female, age 67, right hemisphere 41.2
1911 Female, age 85, right hemisphere 36.9
2148 Female, age 91, left hemisphere 35.5
Dentate gyrus
nTPM: 41.5
2010 Male, age 76, both hemispheres 51.9
1927 Female, age 91, both hemispheres 47.0
2530 Female, age 94, left hemisphere 43.3
2528 Male, age 74, both hemispheres 42.0
2246 Female, age 85, both hemispheres 37.0
2531 Female, age 67, both hemispheres 28.0
Entorhinal gyrus
nTPM: 38.8
1938 Female, age 85, left hemisphere 48.8
2764 Male, age 80, right hemisphere 45.6
1787 Male, age 76, left hemisphere 42.8
2117 Female, age 91, right hemisphere 42.7
2686 Male, age 75, right hemisphere 27.7
2613 Female, age 94, left hemisphere 25.3
Hippocampus, CA1
nTPM: 48.7
2749 Male, age 80, left hemisphere 70.4
2527 Male, age 74, both hemispheres 51.3
1873 Female, age 85, both hemispheres 46.1
2045 Male, age 76, both hemispheres 40.0
2082 Female, age 91, right hemisphere 35.7
Hippocampus, CA2
nTPM: 45.7
2249 Male, age 74, both hemispheres 55.3
1963 Male, age 80, left hemisphere 53.0
2437 Female, age 94, left hemisphere 46.7
1892 Male, age 76, both hemispheres 45.0
1940 Female, age 85, left hemisphere 38.3
2113 Female, age 91, right hemisphere 36.1
Hippocampus, CA3
nTPM: 40.0
1891 Female, age 85, both hemispheres 45.7
2137 Male, age 80, left hemisphere 44.5
1867 Male, age 76, both hemispheres 43.8
2436 Male, age 74, both hemispheres 40.6
2620 Female, age 94, left hemisphere 37.6
2861 Female, age 67, both hemispheres 27.6
Parahippocampal cortex
nTPM: 43.7
1850 Male, age 80, both hemispheres 58.8
1933 Female, age 85, both hemispheres 49.5
2018 Male, age 76, both hemispheres 48.6
1990 Female, age 91, right hemisphere 47.1
2250 Female, age 67, right hemisphere 46.3
2532 Female, age 72, left hemisphere 42.5
2245 Female, age 91, both hemispheres 41.1
2692 Male, age 74, both hemispheres 37.9
2693 Female, age 94, both hemispheres 36.3
2622 Female, age 67, right hemisphere 29.2
Perirhinal gyrus
nTPM: 53.5
1794 Male, age 80, right hemisphere 64.4
1841 Female, age 85, right hemisphere 57.0
1847 Female, age 91, left hemisphere 57.0
2521 Female, age 94, right hemisphere 50.9
2848 Male, age 76, right hemisphere 38.1
Subiculum
nTPM: 43.0
2438 Female, age 94, left hemisphere 55.3
1977 Female, age 85, both hemispheres 47.1
1901 Male, age 80, both hemispheres 46.4
2042 Male, age 76, both hemispheres 41.2
2619 Male, age 74, both hemispheres 34.3
2729 Female, age 91, right hemisphere 33.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.3
Samples: 197

Max nTPM: 35.7
Min nTPM: 9.9
Std nTPM: 4.4
Median nTPM: 21.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 35.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 35.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 33.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 33.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 32.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 32.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 32.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 31.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 31.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 30.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 30.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 241.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 241.8
FF:10169-103B7 60 years, female 317.8
FF:10153-102I9 76 years, female 165.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 95.9
Pig sample Sample description nTPM
Subiculum
nTPM: 92.5
Samples: 4

Max nTPM: 107.1
Min nTPM: 84.9
Sample A Female 107.1
Sample B Female 87.6
Sample C Male 90.3
Sample D Male 84.9
Dorsal hippocampus
nTPM: 93.4
Samples: 4

Max nTPM: 107.3
Min nTPM: 72.4
Sample A Female 107.3
Sample B Female 101.7
Sample C Male 92.3
Sample D Male 72.4
Entorhinal cortex
nTPM: 95.9
Samples: 4

Max nTPM: 106.0
Min nTPM: 87.4
Sample A Female 101.8
Sample B Female 106.0
Sample C Male 88.5
Sample D Male 87.4
Ventral hippocampus
nTPM: 89.7
Samples: 4

Max nTPM: 101.7
Min nTPM: 82.7
Sample A Female 101.7
Sample B Female 88.1
Sample C Male 82.7
Sample D Male 86.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 141.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 141.7
Samples: 4

Max nTPM: 160.3
Min nTPM: 126.6
Sample A Male 147.6
Sample B Male 132.2
Sample C Female 160.3
Sample D Female 126.6
Hippocampal formation
nTPM: 140.8
Samples: 4

Max nTPM: 154.8
Min nTPM: 131.6
Sample A Male 144.9
Sample B Male 131.6
Sample C Female 154.8
Sample D Female 131.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.2
75042266 Antisense, RP_060412_02_D08, Mouse strain C57BL/6J (56 days, male) 10.6
68444714 Antisense, RP_050111_02_D03, Mouse strain C57BL/6J (56 days, male) 3.8

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