MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA Brain:27.3 nTPM
GTEx:11.8 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:13.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2586 Male, age 75, left hemisphere 31.9
2019 Male, age 18, unknown 26.7
2828 Female, age 72, unknown 24.2
2219 Male, age 76, both hemispheres 20.5
1827 Male, age 72, unknown 19.6
1830 Male, age 51, unknown 19.4
1833 Male, age 53, unknown 19.3
2411 Female, age 72, unknown 17.8
2666 Male, age 74, left hemisphere 17.2
1870 Female, age 42, unknown 15.1
Dorsal raphe nucleus
nTPM: 21.5
1828 Male, age 53, unknown 23.7
2047 Male, age 72, unknown 22.4
2016 Female, age 72, unknown 21.6
2298 Female, age 72, unknown 20.9
2750 Male, age 76, both hemispheres 18.9
Inferior colliculus
nTPM: 23.9
2849 Male, age 72, unknown 24.6
2097 Female, age 72, unknown 24.4
1848 Female, age 42, unknown 23.7
1890 Male, age 53, unknown 23.1
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Periaquaductal grey, anterior
nTPM: 27.3
1795 Male, age 51, unknown 30.8
1947 Male, age 18, unknown 25.6
2502 Female, age 75, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 20.4
2850 Male, age 76, both hemispheres 24.4
2464 Female, age 72, unknown 21.8
1840 Male, age 53, unknown 20.3
1831 Male, age 72, unknown 15.1
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 30.9
2140 Male, age 76, both hemispheres 29.6
2053 Male, age 18, unknown 16.7
Pretectal area
nTPM: 24.1
2007 Male, age 72, unknown 30.0
1817 Female, age 42, unknown 28.6
2273 Male, age 74, both hemispheres 27.9
1816 Male, age 51, unknown 26.2
2316 Male, age 76, right hemisphere 25.2
1944 Female, age 72, unknown 25.1
2667 Female, age 75, unknown 23.5
2224 Female, age 72, unknown 21.3
1815 Male, age 53, unknown 20.6
2825 Male, age 18, unknown 18.9
2407 Male, age 75, both hemispheres 17.3
Red nucleus
nTPM: 22.8
2785 Male, age 18, unknown 29.6
2503 Female, age 72, unknown 28.5
2227 Male, age 72, unknown 26.5
2725 Female, age 75, unknown 26.5
2769 Male, age 72, unknown 24.9
1954 Female, age 42, unknown 23.2
1865 Male, age 51, unknown 21.9
2588 Male, age 74, left hemisphere 21.4
1904 Male, age 53, unknown 20.3
2584 Male, age 75, left hemisphere 17.7
1821 Female, age 72, unknown 16.7
2823 Male, age 76, right hemisphere 16.6
Substantia nigra
nTPM: 21.0
1916 Female, age 42, unknown 28.0
1941 Male, age 53, unknown 22.4
2409 Female, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 22.1
1889 Female, age 72, unknown 21.3
2590 Female, age 75, unknown 21.3
2665 Male, age 74, both hemispheres 20.6
1851 Male, age 51, unknown 18.6
2699 Male, age 18, unknown 18.6
2241 Male, age 72, unknown 14.8
Superior colliculus
nTPM: 21.8
1796 Male, age 53, unknown 31.0
2087 Female, age 72, unknown 29.5
2261 Male, age 18, unknown 27.3
1995 Male, age 72, unknown 23.1
1839 Male, age 51, unknown 22.1
2664 Male, age 75, both hemispheres 20.3
2668 Female, age 75, unknown 18.8
1913 Female, age 42, unknown 17.2
2587 Male, age 74, left hemisphere 14.8
1895 Male, age 76, right hemisphere 14.2
Ventral tegmental area
nTPM: 20.6
2218 Male, age 76, both hemispheres 25.7
1915 Female, age 42, unknown 23.2
2223 Female, age 72, unknown 22.1
1942 Male, age 51, unknown 19.0
2410 Female, age 72, unknown 17.3
2021 Male, age 53, unknown 16.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.8
Samples: 139

Max nTPM: 27.2
Min nTPM: 2.9
Std nTPM: 4.4
Median nTPM: 11.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 21.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 20.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 18.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 18.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 17.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 14.9
Min nTPM: 13.6
Sample A Female 14.9
Sample B Female 14.7
Sample C Male 13.9
Sample D Male 13.6
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 12.8
Sample C Male 13.7
Sample D Male 16.3
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 14.7
Min nTPM: 12.7
Sample B Female 14.7
Sample C Male 14.0
Sample D Male 12.7
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 19.0
Min nTPM: 12.2
Sample A Female 17.7
Sample B Female 19.0
Sample C Male 12.2
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 16.7
Min nTPM: 9.5
Sample A Male 16.7
Sample B Male 12.8
Sample C Female 9.5
Sample D Female 13.8

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