MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.6 nTPM
HPA Brain:135.9 nTPM
GTEx:27.6 nTPM
FANTOM5:110.7 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:27.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.2
2586 Male, age 75, left hemisphere 131.2
1830 Male, age 51, unknown 129.5
1870 Female, age 42, unknown 128.4
2828 Female, age 72, unknown 128.0
1833 Male, age 53, unknown 126.1
2019 Male, age 18, unknown 124.7
2411 Female, age 72, unknown 113.8
2666 Male, age 74, left hemisphere 102.7
1827 Male, age 72, unknown 90.2
2219 Male, age 76, both hemispheres 77.1
Dorsal raphe nucleus
nTPM: 103.0
2750 Male, age 76, both hemispheres 135.0
2016 Female, age 72, unknown 113.9
1828 Male, age 53, unknown 103.5
2047 Male, age 72, unknown 84.6
2298 Female, age 72, unknown 77.9
Inferior colliculus
nTPM: 92.6
1890 Male, age 53, unknown 98.9
1848 Female, age 42, unknown 93.8
2849 Male, age 72, unknown 89.1
2097 Female, age 72, unknown 88.6
Median raphe nucleus
nTPM: 81.1
2220 Male, age 76, midline 81.1
Periaquaductal grey, anterior
nTPM: 88.2
2502 Female, age 75, unknown 100.0
1947 Male, age 18, unknown 83.2
1795 Male, age 51, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 80.7
2464 Female, age 72, unknown 97.9
1831 Male, age 72, unknown 84.7
2850 Male, age 76, both hemispheres 76.4
1840 Male, age 53, unknown 63.8
Periaquaductal grey, lateral
nTPM: 88.2
2053 Male, age 18, unknown 92.7
2272 Male, age 74, both hemispheres 87.6
2140 Male, age 76, both hemispheres 84.4
Pretectal area
nTPM: 93.4
2316 Male, age 76, right hemisphere 133.9
2407 Male, age 75, both hemispheres 107.0
1815 Male, age 53, unknown 102.4
2667 Female, age 75, unknown 99.9
1817 Female, age 42, unknown 95.8
2273 Male, age 74, both hemispheres 90.2
2825 Male, age 18, unknown 87.9
2007 Male, age 72, unknown 85.6
2224 Female, age 72, unknown 81.7
1944 Female, age 72, unknown 79.4
1816 Male, age 51, unknown 63.6
Red nucleus
nTPM: 135.9
1904 Male, age 53, unknown 158.0
1865 Male, age 51, unknown 154.7
2769 Male, age 72, unknown 151.7
2823 Male, age 76, right hemisphere 146.9
2785 Male, age 18, unknown 145.1
2227 Male, age 72, unknown 144.4
1954 Female, age 42, unknown 138.9
2503 Female, age 72, unknown 137.0
1821 Female, age 72, unknown 123.7
2588 Male, age 74, left hemisphere 113.5
2584 Male, age 75, left hemisphere 109.6
2725 Female, age 75, unknown 107.5
Substantia nigra
nTPM: 103.7
2699 Male, age 18, unknown 125.8
2409 Female, age 72, unknown 118.7
1851 Male, age 51, unknown 112.2
2665 Male, age 74, both hemispheres 108.6
2583 Male, age 75, right hemisphere 107.8
2590 Female, age 75, unknown 103.0
2241 Male, age 72, unknown 96.9
1916 Female, age 42, unknown 89.2
1941 Male, age 53, unknown 87.9
1889 Female, age 72, unknown 86.9
Superior colliculus
nTPM: 107.2
1913 Female, age 42, unknown 148.9
1995 Male, age 72, unknown 145.7
1839 Male, age 51, unknown 109.4
1895 Male, age 76, right hemisphere 107.7
2668 Female, age 75, unknown 106.3
2587 Male, age 74, left hemisphere 103.4
2664 Male, age 75, both hemispheres 95.7
1796 Male, age 53, unknown 95.2
2087 Female, age 72, unknown 83.2
2261 Male, age 18, unknown 76.2
Ventral tegmental area
nTPM: 103.1
2410 Female, age 72, unknown 108.4
1942 Male, age 51, unknown 107.7
2021 Male, age 53, unknown 104.3
2223 Female, age 72, unknown 104.3
1915 Female, age 42, unknown 102.1
2218 Male, age 76, both hemispheres 91.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.6
Samples: 139

Max nTPM: 70.9
Min nTPM: 7.8
Std nTPM: 10.4
Median nTPM: 25.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 70.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 68.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 64.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 62.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 49.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 46.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 44.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 41.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 41.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 41.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 40.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.7
FF:10158-103A5 76 years, female 110.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.6
Samples: 4

Max nTPM: 60.7
Min nTPM: 39.6
Sample A Female 42.1
Sample B Female 39.6
Sample C Male 48.1
Sample D Male 60.7
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 65.8
Min nTPM: 36.5
Sample A Female 65.8
Sample B Female 44.5
Sample C Male 36.5
Sample D Male 36.5
Periaqueductal gray
nTPM: 40.5
Samples: 3

Max nTPM: 45.5
Min nTPM: 34.9
Sample B Female 45.5
Sample C Male 41.0
Sample D Male 34.9
Superior colliculi
nTPM: 34.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 19.2
Sample A Female 38.9
Sample B Female 19.2
Sample C Male 38.3
Sample D Male 42.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 30.6
Min nTPM: 25.8
Sample A Male 30.6
Sample B Male 26.2
Sample C Female 25.8
Sample D Female 28.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
73925725 Antisense, RP_051214_03_B12, Mouse strain C57BL/6J (56 days, male) 0.3
70946227 Antisense, RP_050421_03_G10, Mouse strain C57BL/6J (56 days, male) 0.1

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