MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA Brain:162.2 nTPM
GTEx:56.2 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:85.2 nTPM
Mouse:138.1 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 162.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.9
1827 Male, age 72, unknown 133.8
2219 Male, age 76, both hemispheres 130.4
1833 Male, age 53, unknown 106.5
2019 Male, age 18, unknown 104.7
2666 Male, age 74, left hemisphere 103.6
2411 Female, age 72, unknown 103.2
2828 Female, age 72, unknown 101.7
2586 Male, age 75, left hemisphere 101.4
1870 Female, age 42, unknown 94.3
1830 Male, age 51, unknown 89.8
Dorsal raphe nucleus
nTPM: 96.5
2298 Female, age 72, unknown 117.5
2047 Male, age 72, unknown 103.2
1828 Male, age 53, unknown 102.1
2750 Male, age 76, both hemispheres 84.4
2016 Female, age 72, unknown 75.5
Inferior colliculus
nTPM: 153.6
2097 Female, age 72, unknown 168.8
1848 Female, age 42, unknown 163.9
2849 Male, age 72, unknown 152.7
1890 Male, age 53, unknown 129.2
Median raphe nucleus
nTPM: 126.3
2220 Male, age 76, midline 126.3
Periaquaductal grey, anterior
nTPM: 162.2
2502 Female, age 75, unknown 262.5
1947 Male, age 18, unknown 113.8
1795 Male, age 51, unknown 110.2
Periaquaductal grey, dorsal
nTPM: 110.2
1840 Male, age 53, unknown 134.3
2464 Female, age 72, unknown 119.2
2850 Male, age 76, both hemispheres 100.0
1831 Male, age 72, unknown 87.4
Periaquaductal grey, lateral
nTPM: 97.7
2140 Male, age 76, both hemispheres 108.8
2053 Male, age 18, unknown 107.8
2272 Male, age 74, both hemispheres 76.5
Pretectal area
nTPM: 136.4
1816 Male, age 51, unknown 210.7
2007 Male, age 72, unknown 165.0
1817 Female, age 42, unknown 163.7
1944 Female, age 72, unknown 148.6
2667 Female, age 75, unknown 147.0
2825 Male, age 18, unknown 126.0
1815 Male, age 53, unknown 124.8
2316 Male, age 76, right hemisphere 120.4
2224 Female, age 72, unknown 110.1
2407 Male, age 75, both hemispheres 106.4
2273 Male, age 74, both hemispheres 77.2
Red nucleus
nTPM: 104.9
1954 Female, age 42, unknown 122.1
1821 Female, age 72, unknown 120.5
2503 Female, age 72, unknown 114.9
2769 Male, age 72, unknown 113.4
2227 Male, age 72, unknown 110.1
2823 Male, age 76, right hemisphere 109.8
2588 Male, age 74, left hemisphere 109.6
2785 Male, age 18, unknown 102.3
1904 Male, age 53, unknown 95.3
2584 Male, age 75, left hemisphere 93.6
1865 Male, age 51, unknown 93.5
2725 Female, age 75, unknown 74.1
Substantia nigra
nTPM: 89.9
1889 Female, age 72, unknown 130.0
2665 Male, age 74, both hemispheres 115.6
1916 Female, age 42, unknown 99.5
1941 Male, age 53, unknown 96.9
2241 Male, age 72, unknown 87.9
1851 Male, age 51, unknown 86.2
2590 Female, age 75, unknown 80.8
2699 Male, age 18, unknown 79.4
2409 Female, age 72, unknown 66.8
2583 Male, age 75, right hemisphere 55.5
Superior colliculus
nTPM: 126.8
2261 Male, age 18, unknown 169.5
1895 Male, age 76, right hemisphere 166.7
2087 Female, age 72, unknown 165.2
2664 Male, age 75, both hemispheres 156.3
1796 Male, age 53, unknown 129.9
1839 Male, age 51, unknown 125.1
2587 Male, age 74, left hemisphere 105.8
2668 Female, age 75, unknown 93.9
1913 Female, age 42, unknown 78.6
1995 Male, age 72, unknown 76.7
Ventral tegmental area
nTPM: 95.8
2218 Male, age 76, both hemispheres 116.1
1942 Male, age 51, unknown 104.3
2410 Female, age 72, unknown 99.0
1915 Female, age 42, unknown 96.3
2021 Male, age 53, unknown 82.8
2223 Female, age 72, unknown 76.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.2
Samples: 139

Max nTPM: 187.5
Min nTPM: 3.1
Std nTPM: 31.0
Median nTPM: 54.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 187.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 156.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 126.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 123.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 115.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 111.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 105.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 97.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 97.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 96.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 95.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 85.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 64.6
Min nTPM: 14.8
Sample A Female 64.6
Sample B Female 27.7
Sample C Male 52.8
Sample D Male 14.8
Midbrain
nTPM: 81.2
Samples: 4

Max nTPM: 143.3
Min nTPM: 15.8
Sample A Female 15.8
Sample B Female 36.1
Sample C Male 143.3
Sample D Male 129.7
Periaqueductal gray
nTPM: 47.4
Samples: 3

Max nTPM: 61.2
Min nTPM: 39.9
Sample B Female 39.9
Sample C Male 61.2
Sample D Male 41.1
Superior colliculi
nTPM: 85.2
Samples: 4

Max nTPM: 105.7
Min nTPM: 42.7
Sample A Female 100.7
Sample B Female 42.7
Sample C Male 91.7
Sample D Male 105.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 138.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 138.1
Samples: 4

Max nTPM: 152.2
Min nTPM: 118.8
Sample A Male 118.8
Sample B Male 137.3
Sample C Female 152.2
Sample D Female 144.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
72001898 Antisense, RP_050915_02_E04, Mouse strain C57BL/6J (56 days, male) 7.6

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