MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.7 nTPM
HPA Brain:41.2 nTPM
GTEx:36.7 nTPM
FANTOM5:239.6 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:52.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.9
2411 Female, age 72, unknown 44.1
1870 Female, age 42, unknown 41.6
1830 Male, age 51, unknown 36.4
1833 Male, age 53, unknown 35.9
2828 Female, age 72, unknown 35.6
2586 Male, age 75, left hemisphere 35.2
2019 Male, age 18, unknown 35.0
1827 Male, age 72, unknown 30.4
2219 Male, age 76, both hemispheres 28.5
2666 Male, age 74, left hemisphere 26.3
Dorsal raphe nucleus
nTPM: 34.7
2750 Male, age 76, both hemispheres 46.5
2298 Female, age 72, unknown 43.6
2047 Male, age 72, unknown 29.0
1828 Male, age 53, unknown 28.3
2016 Female, age 72, unknown 26.2
Inferior colliculus
nTPM: 26.0
2097 Female, age 72, unknown 29.7
1890 Male, age 53, unknown 25.7
1848 Female, age 42, unknown 24.6
2849 Male, age 72, unknown 24.2
Median raphe nucleus
nTPM: 40.9
2220 Male, age 76, midline 40.9
Periaquaductal grey, anterior
nTPM: 33.1
1947 Male, age 18, unknown 37.9
2502 Female, age 75, unknown 32.3
1795 Male, age 51, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 24.8
2850 Male, age 76, both hemispheres 27.2
2464 Female, age 72, unknown 26.6
1831 Male, age 72, unknown 24.1
1840 Male, age 53, unknown 21.4
Periaquaductal grey, lateral
nTPM: 26.1
2272 Male, age 74, both hemispheres 33.7
2053 Male, age 18, unknown 24.3
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 31.3
2667 Female, age 75, unknown 38.2
1817 Female, age 42, unknown 36.5
2224 Female, age 72, unknown 35.9
1815 Male, age 53, unknown 35.3
2007 Male, age 72, unknown 34.8
2273 Male, age 74, both hemispheres 30.2
1944 Female, age 72, unknown 28.4
1816 Male, age 51, unknown 28.0
2825 Male, age 18, unknown 27.8
2407 Male, age 75, both hemispheres 26.2
2316 Male, age 76, right hemisphere 23.3
Red nucleus
nTPM: 41.2
2503 Female, age 72, unknown 54.2
1821 Female, age 72, unknown 52.0
1904 Male, age 53, unknown 48.4
1865 Male, age 51, unknown 44.3
1954 Female, age 42, unknown 43.3
2769 Male, age 72, unknown 42.6
2823 Male, age 76, right hemisphere 40.8
2227 Male, age 72, unknown 39.5
2785 Male, age 18, unknown 36.5
2725 Female, age 75, unknown 36.4
2584 Male, age 75, left hemisphere 29.2
2588 Male, age 74, left hemisphere 27.4
Substantia nigra
nTPM: 29.4
1916 Female, age 42, unknown 45.3
1851 Male, age 51, unknown 37.9
1889 Female, age 72, unknown 36.5
1941 Male, age 53, unknown 31.4
2583 Male, age 75, right hemisphere 29.3
2699 Male, age 18, unknown 28.8
2241 Male, age 72, unknown 28.7
2590 Female, age 75, unknown 26.1
2665 Male, age 74, both hemispheres 24.6
2409 Female, age 72, unknown 5.1
Superior colliculus
nTPM: 30.4
2587 Male, age 74, left hemisphere 43.7
1913 Female, age 42, unknown 39.9
1995 Male, age 72, unknown 34.5
1796 Male, age 53, unknown 31.4
2261 Male, age 18, unknown 30.4
2668 Female, age 75, unknown 27.7
1895 Male, age 76, right hemisphere 25.3
1839 Male, age 51, unknown 25.0
2087 Female, age 72, unknown 23.9
2664 Male, age 75, both hemispheres 22.2
Ventral tegmental area
nTPM: 36.4
2223 Female, age 72, unknown 47.3
2218 Male, age 76, both hemispheres 40.7
1915 Female, age 42, unknown 35.3
2410 Female, age 72, unknown 34.4
1942 Male, age 51, unknown 32.4
2021 Male, age 53, unknown 28.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.7
Samples: 139

Max nTPM: 86.0
Min nTPM: 20.1
Std nTPM: 11.5
Median nTPM: 34.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 86.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 78.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 69.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 68.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 63.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 62.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 61.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 55.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 239.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.6
FF:10158-103A5 76 years, female 239.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 55.6
Min nTPM: 40.5
Sample A Female 47.9
Sample B Female 40.5
Sample C Male 51.7
Sample D Male 55.6
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 67.5
Min nTPM: 36.7
Sample A Female 67.5
Sample B Female 36.7
Sample C Male 48.5
Sample D Male 41.4
Periaqueductal gray
nTPM: 37.9
Samples: 3

Max nTPM: 40.4
Min nTPM: 36.4
Sample B Female 36.4
Sample C Male 40.4
Sample D Male 36.8
Superior colliculi
nTPM: 45.9
Samples: 4

Max nTPM: 48.4
Min nTPM: 39.7
Sample A Female 47.5
Sample B Female 39.7
Sample C Male 48.4
Sample D Male 48.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.5
Samples: 4

Max nTPM: 54.3
Min nTPM: 50.5
Sample A Male 50.5
Sample B Male 51.6
Sample C Female 54.3
Sample D Female 53.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
1811 Antisense, RP_040604_01_B08, Mouse strain C57BL/6J (56 days, male) 0.7
1810 Antisense, RP_040604_01_B08, Mouse strain C57BL/6J (56 days, male) 0.6

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