HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:44.4 nTPM
GTEx:21.1 nTPM
FANTOM5:60.1 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:27.8 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036681Antibody HPA036682Antibody CAB004277
Glial cells Not detectedNot detectedHigh
Neuronal cells MediumHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Hippocampus
nTPM: 38.2
2529 Female, age 94, left hemisphere 53.0
2148 Female, age 91, left hemisphere 39.2
2621 Female, age 67, right hemisphere 38.3
1855 Male, age 76, left hemisphere 33.8
1911 Female, age 85, right hemisphere 32.9
1898 Male, age 80, left hemisphere 32.2
Dentate gyrus
nTPM: 35.8
2528 Male, age 74, both hemispheres 40.4
2246 Female, age 85, both hemispheres 38.5
2530 Female, age 94, left hemisphere 36.3
2531 Female, age 67, both hemispheres 35.3
2010 Male, age 76, both hemispheres 32.5
1927 Female, age 91, both hemispheres 31.7
Entorhinal gyrus
nTPM: 44.4
2686 Male, age 75, right hemisphere 53.0
2764 Male, age 80, right hemisphere 45.4
2117 Female, age 91, right hemisphere 44.5
1787 Male, age 76, left hemisphere 42.9
1938 Female, age 85, left hemisphere 42.8
2613 Female, age 94, left hemisphere 38.0
Hippocampus, CA1
nTPM: 34.7
2527 Male, age 74, both hemispheres 46.6
2082 Female, age 91, right hemisphere 39.2
1873 Female, age 85, both hemispheres 32.2
2749 Male, age 80, left hemisphere 28.9
2045 Male, age 76, both hemispheres 26.6
Hippocampus, CA2
nTPM: 37.3
2437 Female, age 94, left hemisphere 42.2
2113 Female, age 91, right hemisphere 40.6
2249 Male, age 74, both hemispheres 40.2
1940 Female, age 85, left hemisphere 37.5
1963 Male, age 80, left hemisphere 36.2
1892 Male, age 76, both hemispheres 27.4
Hippocampus, CA3
nTPM: 34.7
2861 Female, age 67, both hemispheres 39.2
2436 Male, age 74, both hemispheres 38.0
2620 Female, age 94, left hemisphere 35.6
1891 Female, age 85, both hemispheres 35.1
2137 Male, age 80, left hemisphere 30.3
1867 Male, age 76, both hemispheres 30.1
Parahippocampal cortex
nTPM: 41.8
2692 Male, age 74, both hemispheres 52.5
2622 Female, age 67, right hemisphere 48.5
1933 Female, age 85, both hemispheres 44.0
2532 Female, age 72, left hemisphere 43.2
2693 Female, age 94, both hemispheres 39.4
1990 Female, age 91, right hemisphere 39.2
1850 Male, age 80, both hemispheres 38.8
2245 Female, age 91, both hemispheres 38.8
2018 Male, age 76, both hemispheres 38.1
2250 Female, age 67, right hemisphere 35.2
Perirhinal gyrus
nTPM: 37.6
1794 Male, age 80, right hemisphere 40.7
2521 Female, age 94, right hemisphere 39.9
1841 Female, age 85, right hemisphere 36.6
2848 Male, age 76, right hemisphere 36.0
1847 Female, age 91, left hemisphere 34.7
Subiculum
nTPM: 41.0
2438 Female, age 94, left hemisphere 48.1
2619 Male, age 74, both hemispheres 47.8
2729 Female, age 91, right hemisphere 40.4
1977 Female, age 85, both hemispheres 38.2
2042 Male, age 76, both hemispheres 37.2
1901 Male, age 80, both hemispheres 34.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.1
Samples: 197

Max nTPM: 40.6
Min nTPM: 7.1
Std nTPM: 5.7
Median nTPM: 20.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 40.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 40.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 39.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 38.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 37.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 32.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 31.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 30.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 30.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 30.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 30.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.1
FF:10153-102I9 76 years, female 89.1
FF:10169-103B7 60 years, female 31.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Subiculum
nTPM: 18.3
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.3
Sample A Female 21.2
Sample B Female 16.3
Sample C Male 18.8
Sample D Male 16.8
Dorsal hippocampus
nTPM: 18.1
Samples: 4

Max nTPM: 19.1
Min nTPM: 16.7
Sample A Female 18.4
Sample B Female 19.1
Sample C Male 18.0
Sample D Male 16.7
Entorhinal cortex
nTPM: 21.2
Samples: 4

Max nTPM: 22.8
Min nTPM: 17.4
Sample A Female 22.1
Sample B Female 22.3
Sample C Male 22.8
Sample D Male 17.4
Ventral hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 15.4
Sample A Female 17.1
Sample B Female 15.4
Sample C Male 27.0
Sample D Male 19.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.8
Samples: 4

Max nTPM: 29.2
Min nTPM: 26.0
Sample A Male 28.3
Sample B Male 29.2
Sample C Female 26.0
Sample D Female 27.7
Hippocampal formation
nTPM: 26.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 24.8
Sample A Male 26.1
Sample B Male 28.4
Sample C Female 27.0
Sample D Female 24.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
70300834 Antisense, RP_050607_02_E02, Mouse strain C57BL/6J (56 days, male) 7.0
74300789 Antisense, RP_051219_03_G08, Mouse strain C57BL/6J (56 days, male) 3.9

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