MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:29.0 nTPM
GTEx:17.3 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:36.8 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2219 Male, age 76, both hemispheres 33.0
2666 Male, age 74, left hemisphere 31.7
2586 Male, age 75, left hemisphere 31.1
1827 Male, age 72, unknown 27.0
2411 Female, age 72, unknown 23.4
2019 Male, age 18, unknown 22.5
2828 Female, age 72, unknown 21.4
1833 Male, age 53, unknown 20.1
1830 Male, age 51, unknown 18.7
1870 Female, age 42, unknown 18.6
Dorsal raphe nucleus
nTPM: 23.4
2298 Female, age 72, unknown 28.9
2047 Male, age 72, unknown 28.4
1828 Male, age 53, unknown 22.3
2750 Male, age 76, both hemispheres 20.0
2016 Female, age 72, unknown 17.6
Inferior colliculus
nTPM: 27.3
2097 Female, age 72, unknown 30.8
1848 Female, age 42, unknown 26.3
1890 Male, age 53, unknown 26.0
2849 Male, age 72, unknown 25.9
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Periaquaductal grey, anterior
nTPM: 28.9
2502 Female, age 75, unknown 32.6
1947 Male, age 18, unknown 27.9
1795 Male, age 51, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 22.6
1840 Male, age 53, unknown 25.1
1831 Male, age 72, unknown 25.0
2464 Female, age 72, unknown 22.9
2850 Male, age 76, both hemispheres 17.6
Periaquaductal grey, lateral
nTPM: 18.3
2053 Male, age 18, unknown 21.4
2140 Male, age 76, both hemispheres 18.0
2272 Male, age 74, both hemispheres 15.5
Pretectal area
nTPM: 25.0
1816 Male, age 51, unknown 31.8
1944 Female, age 72, unknown 30.5
2007 Male, age 72, unknown 30.0
1817 Female, age 42, unknown 27.7
2667 Female, age 75, unknown 27.4
2224 Female, age 72, unknown 26.4
1815 Male, age 53, unknown 24.2
2407 Male, age 75, both hemispheres 22.1
2825 Male, age 18, unknown 20.2
2316 Male, age 76, right hemisphere 19.6
2273 Male, age 74, both hemispheres 15.1
Red nucleus
nTPM: 18.3
2584 Male, age 75, left hemisphere 21.8
2588 Male, age 74, left hemisphere 20.9
2785 Male, age 18, unknown 20.9
2503 Female, age 72, unknown 19.8
2769 Male, age 72, unknown 18.6
1821 Female, age 72, unknown 18.4
1954 Female, age 42, unknown 18.2
2227 Male, age 72, unknown 17.4
1904 Male, age 53, unknown 16.7
2823 Male, age 76, right hemisphere 16.7
1865 Male, age 51, unknown 16.1
2725 Female, age 75, unknown 14.4
Substantia nigra
nTPM: 27.1
1916 Female, age 42, unknown 44.3
1941 Male, age 53, unknown 32.5
1851 Male, age 51, unknown 32.0
2665 Male, age 74, both hemispheres 28.3
1889 Female, age 72, unknown 26.7
2241 Male, age 72, unknown 25.6
2699 Male, age 18, unknown 25.6
2583 Male, age 75, right hemisphere 21.0
2409 Female, age 72, unknown 18.5
2590 Female, age 75, unknown 16.4
Superior colliculus
nTPM: 23.8
2668 Female, age 75, unknown 35.8
1796 Male, age 53, unknown 30.2
2664 Male, age 75, both hemispheres 29.0
1895 Male, age 76, right hemisphere 26.6
2087 Female, age 72, unknown 23.4
2261 Male, age 18, unknown 23.1
1839 Male, age 51, unknown 21.9
2587 Male, age 74, left hemisphere 20.5
1913 Female, age 42, unknown 14.1
1995 Male, age 72, unknown 13.2
Ventral tegmental area
nTPM: 27.1
2218 Male, age 76, both hemispheres 32.4
1915 Female, age 42, unknown 29.5
1942 Male, age 51, unknown 28.3
2410 Female, age 72, unknown 28.3
2223 Female, age 72, unknown 23.4
2021 Male, age 53, unknown 20.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 76.8
Min nTPM: 2.2
Std nTPM: 12.2
Median nTPM: 14.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 42.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 41.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 40.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 36.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 36.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.6
Samples: 4

Max nTPM: 23.8
Min nTPM: 7.0
Sample A Female 23.8
Sample B Female 10.8
Sample C Male 20.6
Sample D Male 7.0
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 22.3
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 14.7
Sample C Male 22.3
Sample D Male 20.7
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 18.1
Min nTPM: 10.4
Sample B Female 13.5
Sample C Male 18.1
Sample D Male 10.4
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 11.6
Sample A Female 24.5
Sample B Female 11.6
Sample C Male 24.4
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 38.0
Min nTPM: 35.5
Sample A Male 38.0
Sample B Male 37.2
Sample C Female 35.5
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
75774676 Antisense, RP_060530_01_D01, Mouse strain C57BL/6J (56 days, male) 7.6
587406 Antisense, RP_040831_01_E01, Mouse strain C57BL/6J (56 days, male) 5.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org