MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA Brain:36.0 nTPM
GTEx:40.7 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:9.6 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
2411 Female, age 72, unknown 38.3
1870 Female, age 42, unknown 37.3
1830 Male, age 51, unknown 35.5
1833 Male, age 53, unknown 35.4
2828 Female, age 72, unknown 35.4
2019 Male, age 18, unknown 33.2
2666 Male, age 74, left hemisphere 31.4
2586 Male, age 75, left hemisphere 30.9
1827 Male, age 72, unknown 29.8
2219 Male, age 76, both hemispheres 24.7
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 38.8
2047 Male, age 72, unknown 33.3
2016 Female, age 72, unknown 32.6
2298 Female, age 72, unknown 32.4
1828 Male, age 53, unknown 31.6
Inferior colliculus
nTPM: 30.7
2097 Female, age 72, unknown 31.9
1890 Male, age 53, unknown 31.8
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 29.1
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Periaquaductal grey, anterior
nTPM: 34.0
2502 Female, age 75, unknown 38.6
1947 Male, age 18, unknown 34.9
1795 Male, age 51, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 32.2
2464 Female, age 72, unknown 36.7
1840 Male, age 53, unknown 33.5
1831 Male, age 72, unknown 29.9
2850 Male, age 76, both hemispheres 28.6
Periaquaductal grey, lateral
nTPM: 29.2
2140 Male, age 76, both hemispheres 31.5
2053 Male, age 18, unknown 28.4
2272 Male, age 74, both hemispheres 27.6
Pretectal area
nTPM: 29.4
2316 Male, age 76, right hemisphere 35.7
2825 Male, age 18, unknown 32.7
2224 Female, age 72, unknown 32.6
1817 Female, age 42, unknown 30.5
2667 Female, age 75, unknown 30.4
1815 Male, age 53, unknown 29.9
2273 Male, age 74, both hemispheres 29.9
2007 Male, age 72, unknown 26.7
1944 Female, age 72, unknown 25.3
1816 Male, age 51, unknown 24.9
2407 Male, age 75, both hemispheres 24.9
Red nucleus
nTPM: 36.0
1821 Female, age 72, unknown 43.1
1865 Male, age 51, unknown 39.2
1904 Male, age 53, unknown 38.9
2227 Male, age 72, unknown 38.7
2823 Male, age 76, right hemisphere 38.6
1954 Female, age 42, unknown 37.0
2769 Male, age 72, unknown 36.5
2503 Female, age 72, unknown 35.8
2785 Male, age 18, unknown 32.9
2588 Male, age 74, left hemisphere 31.5
2584 Male, age 75, left hemisphere 30.1
2725 Female, age 75, unknown 29.7
Substantia nigra
nTPM: 34.4
1851 Male, age 51, unknown 39.9
2241 Male, age 72, unknown 39.2
2699 Male, age 18, unknown 37.5
2409 Female, age 72, unknown 35.0
1916 Female, age 42, unknown 34.9
2590 Female, age 75, unknown 34.4
1889 Female, age 72, unknown 31.8
2665 Male, age 74, both hemispheres 31.8
1941 Male, age 53, unknown 30.8
2583 Male, age 75, right hemisphere 28.8
Superior colliculus
nTPM: 30.3
1913 Female, age 42, unknown 34.6
1839 Male, age 51, unknown 34.2
2587 Male, age 74, left hemisphere 33.1
1995 Male, age 72, unknown 32.8
2668 Female, age 75, unknown 30.3
1895 Male, age 76, right hemisphere 29.9
2664 Male, age 75, both hemispheres 27.6
1796 Male, age 53, unknown 27.4
2087 Female, age 72, unknown 26.8
2261 Male, age 18, unknown 26.5
Ventral tegmental area
nTPM: 34.5
2410 Female, age 72, unknown 43.4
1915 Female, age 42, unknown 35.5
2021 Male, age 53, unknown 34.6
2218 Male, age 76, both hemispheres 31.7
2223 Female, age 72, unknown 31.4
1942 Male, age 51, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.7
Samples: 139

Max nTPM: 62.6
Min nTPM: 18.9
Std nTPM: 7.9
Median nTPM: 39.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 61.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 57.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 57.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 55.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 54.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 53.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.6
FF:10158-103A5 76 years, female 117.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.2
Samples: 4

Max nTPM: 40.9
Min nTPM: 27.0
Sample A Female 40.9
Sample B Female 31.3
Sample C Male 33.5
Sample D Male 27.0
Midbrain
nTPM: 34.9
Samples: 4

Max nTPM: 44.7
Min nTPM: 30.0
Sample A Female 44.7
Sample B Female 34.5
Sample C Male 30.0
Sample D Male 30.2
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 34.7
Min nTPM: 28.8
Sample B Female 32.6
Sample C Male 34.7
Sample D Male 28.8
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 36.0
Min nTPM: 28.8
Sample A Female 36.0
Sample B Female 32.7
Sample C Male 28.8
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.6
Sample A Male 9.0
Sample B Male 11.5
Sample C Female 8.6
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69013648 Antisense, RP_050309_02_F12, Mouse strain C57BL/6J (56 days, male) 3.0

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