MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:18.0 nTPM
GTEx:9.6 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:12.2 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
2219 Male, age 76, both hemispheres 20.6
2019 Male, age 18, unknown 17.4
2666 Male, age 74, left hemisphere 17.2
2586 Male, age 75, left hemisphere 17.1
1833 Male, age 53, unknown 16.1
1827 Male, age 72, unknown 15.6
1870 Female, age 42, unknown 15.2
1830 Male, age 51, unknown 15.0
2411 Female, age 72, unknown 14.9
2828 Female, age 72, unknown 14.5
Dorsal raphe nucleus
nTPM: 15.5
2047 Male, age 72, unknown 16.6
2298 Female, age 72, unknown 16.3
1828 Male, age 53, unknown 16.0
2750 Male, age 76, both hemispheres 14.9
2016 Female, age 72, unknown 13.7
Inferior colliculus
nTPM: 15.2
2849 Male, age 72, unknown 17.7
1890 Male, age 53, unknown 15.7
1848 Female, age 42, unknown 15.4
2097 Female, age 72, unknown 12.1
Median raphe nucleus
nTPM: 18.0
2220 Male, age 76, midline 18.0
Periaquaductal grey, anterior
nTPM: 15.5
1795 Male, age 51, unknown 16.7
2502 Female, age 75, unknown 15.4
1947 Male, age 18, unknown 14.4
Periaquaductal grey, dorsal
nTPM: 15.0
2850 Male, age 76, both hemispheres 18.1
1840 Male, age 53, unknown 15.6
2464 Female, age 72, unknown 13.4
1831 Male, age 72, unknown 12.8
Periaquaductal grey, lateral
nTPM: 15.9
2140 Male, age 76, both hemispheres 19.0
2272 Male, age 74, both hemispheres 14.4
2053 Male, age 18, unknown 14.3
Pretectal area
nTPM: 16.1
2224 Female, age 72, unknown 17.9
2407 Male, age 75, both hemispheres 17.9
1817 Female, age 42, unknown 16.9
2825 Male, age 18, unknown 16.3
1816 Male, age 51, unknown 16.1
2007 Male, age 72, unknown 16.1
2316 Male, age 76, right hemisphere 16.1
2667 Female, age 75, unknown 15.9
1944 Female, age 72, unknown 15.5
1815 Male, age 53, unknown 14.6
2273 Male, age 74, both hemispheres 13.9
Red nucleus
nTPM: 15.1
2227 Male, age 72, unknown 16.3
2725 Female, age 75, unknown 15.8
1954 Female, age 42, unknown 15.6
2785 Male, age 18, unknown 15.6
2503 Female, age 72, unknown 15.2
1865 Male, age 51, unknown 15.1
2769 Male, age 72, unknown 15.1
1904 Male, age 53, unknown 14.9
1821 Female, age 72, unknown 14.8
2588 Male, age 74, left hemisphere 14.7
2584 Male, age 75, left hemisphere 14.4
2823 Male, age 76, right hemisphere 14.3
Substantia nigra
nTPM: 16.1
1916 Female, age 42, unknown 18.5
2699 Male, age 18, unknown 17.5
2665 Male, age 74, both hemispheres 17.1
1941 Male, age 53, unknown 16.8
1851 Male, age 51, unknown 16.3
2590 Female, age 75, unknown 15.7
1889 Female, age 72, unknown 15.0
2409 Female, age 72, unknown 15.0
2241 Male, age 72, unknown 14.5
2583 Male, age 75, right hemisphere 14.5
Superior colliculus
nTPM: 14.8
1796 Male, age 53, unknown 16.3
1913 Female, age 42, unknown 15.5
2087 Female, age 72, unknown 15.2
2587 Male, age 74, left hemisphere 14.8
2664 Male, age 75, both hemispheres 14.6
2668 Female, age 75, unknown 14.6
1839 Male, age 51, unknown 14.5
1995 Male, age 72, unknown 14.4
2261 Male, age 18, unknown 14.4
1895 Male, age 76, right hemisphere 13.4
Ventral tegmental area
nTPM: 14.6
1915 Female, age 42, unknown 15.3
2223 Female, age 72, unknown 15.3
2218 Male, age 76, both hemispheres 14.9
2410 Female, age 72, unknown 14.9
1942 Male, age 51, unknown 14.7
2021 Male, age 53, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 18.6
Min nTPM: 0.9
Std nTPM: 2.8
Median nTPM: 9.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 18.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 16.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 15.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 15.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 13.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 13.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 13.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 13.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.4
Sample A Female 9.5
Sample B Female 7.4
Sample C Male 9.6
Sample D Male 10.0
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.9
Sample A Female 12.7
Sample B Female 9.4
Sample C Male 7.9
Sample D Male 8.2
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 8.8
Min nTPM: 7.6
Sample B Female 8.5
Sample C Male 8.8
Sample D Male 7.6
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.3
Sample A Female 9.0
Sample B Female 7.3
Sample C Male 8.6
Sample D Male 9.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.2
Sample A Male 13.1
Sample B Male 12.3
Sample C Female 11.2
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
71610895 Antisense, RP_050927_02_B04, Mouse strain C57BL/6J (56 days, male) 3.2

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