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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
45.7
nTPM
Monaco:
60.9
nTPM
Schmiedel:
32.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
45.7
HPA sample
nTPM
gdT-cell nTPM: 20.7
Samples: 6
Max nTPM: 26.8
Min nTPM: 12.9
P10809_1007
12.9
P10809_1022
26.8
P10809_1041
19.7
P10809_1060
22.3
P10809_1077
19.7
P10809_1098
22.7
MAIT T-cell nTPM: 11.6
Samples: 6
Max nTPM: 21.3
Min nTPM: 5.1
P10809_1006
5.1
P10809_1024
7.8
P10809_1043
21.3
P10809_1062
8.6
P10809_1083
18.0
P10809_1097
8.7
Memory CD4 T-cell nTPM: 12.5
Samples: 6
Max nTPM: 21.7
Min nTPM: 6.9
P10809_1014
9.0
P10809_1026
8.6
P10809_1045
21.7
P10809_1064
6.9
P10809_1086
12.5
P10809_1113
16.4
Memory CD8 T-cell nTPM: 25.7
Samples: 5
Max nTPM: 39.5
Min nTPM: 18.0
P10809_1012
22.2
P10809_1027
23.0
P10809_1046
39.5
P10809_1065
18.0
P10809_1111
25.7
Naive CD4 T-cell nTPM: 45.7
Samples: 6
Max nTPM: 102.1
Min nTPM: 18.4
P10809_1015
18.4
P10809_1030
42.9
P10809_1049
102.1
P10809_1068
30.7
P10809_1085
34.5
P10809_1112
45.3
Naive CD8 T-cell nTPM: 36.4
Samples: 6
Max nTPM: 60.9
Min nTPM: 17.9
P10809_1016
37.7
P10809_1031
28.7
P10809_1050
60.9
P10809_1069
25.8
P10809_1087
17.9
P10809_1110
47.2
T-reg nTPM: 12.2
Samples: 6
Max nTPM: 24.7
Min nTPM: 1.3
P10809_1018
1.3
P10809_1037
15.0
P10809_1056
24.7
P10809_1075
10.3
P10809_1094
7.1
P10809_1106
15.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
60.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 41.6
Samples: 4
Max nTPM: 56.9
Min nTPM: 31.9
RHH5202_R3573
43.1
RHH5230_R3602
31.9
RHH5259_R3631
34.6
RHH5288_R3660
56.9
Effector memory CD8 T-cell nTPM: 22.9
Samples: 4
Max nTPM: 37.5
Min nTPM: 10.7
RHH5203_R3574
27.7
RHH5231_R3603
37.5
RHH5260_R3632
15.7
RHH5289_R3661
10.7
MAIT T-cell nTPM: 14.9
Samples: 4
Max nTPM: 20.4
Min nTPM: 2.8
RHH5233_R3605
20.4
RHH5205_R3576
2.8
RHH5262_R3634
17.2
RHH5297_R3663
19.3
Memory CD4 T-cell TFH nTPM: 38.5
Samples: 4
Max nTPM: 55.4
Min nTPM: 25.7
RHH5300_R3666
34.9
RHH5236_R3608
55.4
RHH5265_R3637
25.7
RHH5208_R3579
37.8
Memory CD4 T-cell Th1 nTPM: 20.4
Samples: 4
Max nTPM: 32.5
Min nTPM: 8.1
RHH5210_R3581
29.9
RHH5302_R3668
32.5
RHH5238_R3610
10.9
RHH5267_R3639
8.1
Memory CD4 T-cell Th1/Th17 nTPM: 9.0
Samples: 4
Max nTPM: 16.7
Min nTPM: 3.9
RHH5303_R3669
16.7
RHH5211_R3582
7.9
RHH5239_R3611
3.9
RHH5268_R3640
7.5
Memory CD4 T-cell Th17 nTPM: 10.9
Samples: 4
Max nTPM: 12.7
Min nTPM: 9.2
RHH5304_R3670
12.4
RHH5212_R3583
9.3
RHH5240_R3612
12.7
RHH5269_R3641
9.2
Memory CD4 T-cell Th2 nTPM: 33.4
Samples: 4
Max nTPM: 37.5
Min nTPM: 27.7
RHH5305_R3671
35.5
RHH5213_R3584
33.0
RHH5241_R3613
37.5
RHH5270_R3642
27.7
Naive CD4 T-cell nTPM: 55.2
Samples: 4
Max nTPM: 62.0
Min nTPM: 51.3
RHH5306_R3672
62.0
RHH5214_R3585
55.7
RHH5242_R3614
51.3
RHH5271_R3643
51.8
Naive CD8 T-cell nTPM: 60.9
Samples: 4
Max nTPM: 71.2
Min nTPM: 45.7
RHH5201_R3572
56.4
RHH5229_R3601
45.7
RHH5258_R3630
71.2
RHH5287_R3659
70.1
Non-Vd2 gdTCR nTPM: 30.6
Samples: 4
Max nTPM: 43.9
Min nTPM: 21.8
RHH5235_R3607
23.7
RHH5264_R3636
32.9
RHH5207_R3578
21.8
RHH5299_R3665
43.9
T-reg nTPM: 24.7
Samples: 4
Max nTPM: 33.1
Min nTPM: 13.4
RHH5301_R3667
26.7
RHH5237_R3609
33.1
RHH5266_R3638
25.6
RHH5209_R3580
13.4
Terminal effector memory CD4 T-cell nTPM: 20.2
Samples: 2
Max nTPM: 29.8
Min nTPM: 10.6
RHH5243_R3615
10.6
RHH5272_R3644
29.8
Terminal effector memory CD8 T-cell nTPM: 23.9
Samples: 4
Max nTPM: 30.6
Min nTPM: 13.9
RHH5232_R3604
22.2
RHH5204_R3575
28.9
RHH5261_R3633
13.9
RHH5296_R3662
30.6
Vd2 gdTCR nTPM: 26.8
Samples: 4
Max nTPM: 39.9
Min nTPM: 19.1
RHH5234_R3606
28.8
RHH5206_R3577
19.5
RHH5263_R3635
19.1
RHH5298_R3664
39.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
