MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA Brain:25.6 nTPM
GTEx:40.8 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:26.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.6
2666 Male, age 74, left hemisphere 22.2
1827 Male, age 72, unknown 20.5
1870 Female, age 42, unknown 20.5
2586 Male, age 75, left hemisphere 20.0
2411 Female, age 72, unknown 19.3
2828 Female, age 72, unknown 18.1
2219 Male, age 76, both hemispheres 17.7
2019 Male, age 18, unknown 16.7
1830 Male, age 51, unknown 15.6
1833 Male, age 53, unknown 15.0
Dorsal raphe nucleus
nTPM: 20.9
2750 Male, age 76, both hemispheres 24.1
2047 Male, age 72, unknown 22.8
2298 Female, age 72, unknown 22.5
1828 Male, age 53, unknown 20.7
2016 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 15.3
2849 Male, age 72, unknown 16.5
2097 Female, age 72, unknown 15.7
1890 Male, age 53, unknown 15.0
1848 Female, age 42, unknown 14.1
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 17.0
2502 Female, age 75, unknown 18.8
1795 Male, age 51, unknown 18.6
1947 Male, age 18, unknown 13.6
Periaquaductal grey, dorsal
nTPM: 16.7
2850 Male, age 76, both hemispheres 20.3
1831 Male, age 72, unknown 16.6
2464 Female, age 72, unknown 15.3
1840 Male, age 53, unknown 14.5
Periaquaductal grey, lateral
nTPM: 15.7
2140 Male, age 76, both hemispheres 16.0
2053 Male, age 18, unknown 15.6
2272 Male, age 74, both hemispheres 15.5
Pretectal area
nTPM: 16.9
2825 Male, age 18, unknown 21.2
1816 Male, age 51, unknown 20.3
1815 Male, age 53, unknown 18.8
2407 Male, age 75, both hemispheres 18.3
1817 Female, age 42, unknown 18.2
2007 Male, age 72, unknown 16.9
1944 Female, age 72, unknown 16.1
2273 Male, age 74, both hemispheres 14.5
2316 Male, age 76, right hemisphere 14.2
2224 Female, age 72, unknown 13.6
2667 Female, age 75, unknown 13.2
Red nucleus
nTPM: 18.0
1821 Female, age 72, unknown 20.7
2725 Female, age 75, unknown 20.4
2584 Male, age 75, left hemisphere 19.9
2769 Male, age 72, unknown 19.4
2823 Male, age 76, right hemisphere 18.8
2227 Male, age 72, unknown 17.9
2785 Male, age 18, unknown 17.9
2503 Female, age 72, unknown 17.4
1865 Male, age 51, unknown 16.9
2588 Male, age 74, left hemisphere 16.7
1904 Male, age 53, unknown 16.1
1954 Female, age 42, unknown 14.5
Substantia nigra
nTPM: 21.0
1916 Female, age 42, unknown 28.7
1851 Male, age 51, unknown 25.3
1941 Male, age 53, unknown 23.4
2665 Male, age 74, both hemispheres 23.3
2699 Male, age 18, unknown 23.0
1889 Female, age 72, unknown 21.5
2241 Male, age 72, unknown 17.8
2583 Male, age 75, right hemisphere 17.7
2590 Female, age 75, unknown 17.0
2409 Female, age 72, unknown 12.4
Superior colliculus
nTPM: 16.2
2587 Male, age 74, left hemisphere 21.0
2668 Female, age 75, unknown 19.1
1796 Male, age 53, unknown 18.3
2664 Male, age 75, both hemispheres 16.7
2261 Male, age 18, unknown 15.5
1895 Male, age 76, right hemisphere 15.3
2087 Female, age 72, unknown 14.9
1913 Female, age 42, unknown 14.7
1839 Male, age 51, unknown 13.8
1995 Male, age 72, unknown 12.6
Ventral tegmental area
nTPM: 19.6
1915 Female, age 42, unknown 21.7
2021 Male, age 53, unknown 21.0
2218 Male, age 76, both hemispheres 20.4
2410 Female, age 72, unknown 19.2
2223 Female, age 72, unknown 18.4
1942 Male, age 51, unknown 17.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.8
Samples: 139

Max nTPM: 72.1
Min nTPM: 24.4
Std nTPM: 8.4
Median nTPM: 40.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 61.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 58.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 56.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 54.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.7
FF:10158-103A5 76 years, female 85.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 25.9
Min nTPM: 18.9
Sample A Female 25.9
Sample B Female 21.5
Sample C Male 22.9
Sample D Male 18.9
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 28.2
Min nTPM: 16.2
Sample A Female 28.2
Sample B Female 21.5
Sample C Male 22.5
Sample D Male 16.2
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 23.3
Min nTPM: 20.0
Sample B Female 20.6
Sample C Male 23.3
Sample D Male 20.0
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.1
Sample A Female 20.1
Sample B Female 20.2
Sample C Male 18.3
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 29.2
Min nTPM: 23.8
Sample A Male 26.0
Sample B Male 27.6
Sample C Female 23.8
Sample D Female 29.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69080025 Antisense, RP_050324_01_E03, Mouse strain C57BL/6J (56 days, male) 0.5

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