MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA Brain:73.1 nTPM
GTEx:3.9 nTPM
FANTOM5:199.5 Scaled Tags Per Million
Pig:130.0 nTPM
Mouse:53.0 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.5
2411 Female, age 72, unknown 97.5
1830 Male, age 51, unknown 93.8
1870 Female, age 42, unknown 88.4
1833 Male, age 53, unknown 81.7
1827 Male, age 72, unknown 61.1
2828 Female, age 72, unknown 56.7
2666 Male, age 74, left hemisphere 55.9
2219 Male, age 76, both hemispheres 54.6
2019 Male, age 18, unknown 54.0
2586 Male, age 75, left hemisphere 50.9
Dorsal raphe nucleus
nTPM: 64.3
2750 Male, age 76, both hemispheres 90.3
2047 Male, age 72, unknown 72.9
2016 Female, age 72, unknown 62.1
1828 Male, age 53, unknown 48.5
2298 Female, age 72, unknown 47.7
Inferior colliculus
nTPM: 58.6
2849 Male, age 72, unknown 64.3
1848 Female, age 42, unknown 61.9
1890 Male, age 53, unknown 54.8
2097 Female, age 72, unknown 53.3
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Periaquaductal grey, anterior
nTPM: 67.4
1947 Male, age 18, unknown 90.8
2502 Female, age 75, unknown 62.4
1795 Male, age 51, unknown 48.9
Periaquaductal grey, dorsal
nTPM: 52.8
2464 Female, age 72, unknown 68.8
1840 Male, age 53, unknown 60.9
2850 Male, age 76, both hemispheres 40.8
1831 Male, age 72, unknown 40.6
Periaquaductal grey, lateral
nTPM: 49.4
2053 Male, age 18, unknown 56.9
2272 Male, age 74, both hemispheres 52.6
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 49.3
2407 Male, age 75, both hemispheres 69.4
2825 Male, age 18, unknown 65.3
2316 Male, age 76, right hemisphere 56.7
2224 Female, age 72, unknown 56.2
2273 Male, age 74, both hemispheres 53.2
1815 Male, age 53, unknown 51.6
1817 Female, age 42, unknown 42.9
2007 Male, age 72, unknown 41.1
2667 Female, age 75, unknown 41.0
1944 Female, age 72, unknown 33.1
1816 Male, age 51, unknown 31.3
Red nucleus
nTPM: 73.1
1865 Male, age 51, unknown 89.6
2503 Female, age 72, unknown 85.1
1904 Male, age 53, unknown 78.5
1821 Female, age 72, unknown 76.8
1954 Female, age 42, unknown 73.9
2227 Male, age 72, unknown 72.4
2588 Male, age 74, left hemisphere 72.2
2769 Male, age 72, unknown 71.4
2823 Male, age 76, right hemisphere 67.3
2584 Male, age 75, left hemisphere 65.2
2725 Female, age 75, unknown 63.0
2785 Male, age 18, unknown 62.1
Substantia nigra
nTPM: 57.3
2583 Male, age 75, right hemisphere 90.3
2409 Female, age 72, unknown 75.1
2590 Female, age 75, unknown 70.0
1851 Male, age 51, unknown 60.9
2241 Male, age 72, unknown 58.1
1889 Female, age 72, unknown 50.5
2699 Male, age 18, unknown 46.3
1941 Male, age 53, unknown 45.2
1916 Female, age 42, unknown 41.9
2665 Male, age 74, both hemispheres 34.8
Superior colliculus
nTPM: 63.0
1913 Female, age 42, unknown 91.4
2587 Male, age 74, left hemisphere 75.5
1995 Male, age 72, unknown 74.1
1839 Male, age 51, unknown 74.0
1895 Male, age 76, right hemisphere 68.8
2668 Female, age 75, unknown 67.1
1796 Male, age 53, unknown 55.9
2261 Male, age 18, unknown 47.4
2664 Male, age 75, both hemispheres 40.0
2087 Female, age 72, unknown 35.8
Ventral tegmental area
nTPM: 65.5
2223 Female, age 72, unknown 88.6
2410 Female, age 72, unknown 75.9
2021 Male, age 53, unknown 69.4
1915 Female, age 42, unknown 56.6
1942 Male, age 51, unknown 56.2
2218 Male, age 76, both hemispheres 46.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.9
Samples: 139

Max nTPM: 25.8
Min nTPM: 0.1
Std nTPM: 3.9
Median nTPM: 2.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 23.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 16.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 12.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 11.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 10.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 9.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 9.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 199.5
FF:10158-103A5 76 years, female 199.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 130.0
Samples: 4

Max nTPM: 194.6
Min nTPM: 101.7
Sample A Female 103.1
Sample B Female 101.7
Sample C Male 120.6
Sample D Male 194.6
Midbrain
nTPM: 117.4
Samples: 4

Max nTPM: 155.6
Min nTPM: 76.4
Sample A Female 155.6
Sample B Female 131.8
Sample C Male 76.4
Sample D Male 105.6
Periaqueductal gray
nTPM: 114.8
Samples: 3

Max nTPM: 119.0
Min nTPM: 106.9
Sample B Female 118.6
Sample C Male 106.9
Sample D Male 119.0
Superior colliculi
nTPM: 85.7
Samples: 4

Max nTPM: 118.8
Min nTPM: 51.6
Sample A Female 80.6
Sample B Female 51.6
Sample C Male 91.6
Sample D Male 118.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 57.8
Min nTPM: 42.9
Sample A Male 42.9
Sample B Male 54.4
Sample C Female 57.8
Sample D Female 57.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69526994 Antisense, RP_050421_02_A11, Mouse strain C57BL/6J (56 days, male) 9.9
74881560 Antisense, RP_060315_04_C12, Mouse strain C57BL/6J (56 days, male) 7.4

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