MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:16.9 nTPM
GTEx:12.9 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:21.9 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2019 Male, age 18, unknown 17.7
2411 Female, age 72, unknown 16.6
1827 Male, age 72, unknown 15.1
2219 Male, age 76, both hemispheres 14.0
1833 Male, age 53, unknown 13.9
1830 Male, age 51, unknown 13.5
2586 Male, age 75, left hemisphere 13.5
2828 Female, age 72, unknown 13.4
2666 Male, age 74, left hemisphere 13.2
1870 Female, age 42, unknown 13.1
Dorsal raphe nucleus
nTPM: 14.6
2298 Female, age 72, unknown 16.5
1828 Male, age 53, unknown 14.6
2016 Female, age 72, unknown 14.4
2750 Male, age 76, both hemispheres 14.0
2047 Male, age 72, unknown 13.6
Inferior colliculus
nTPM: 16.9
2097 Female, age 72, unknown 20.5
1890 Male, age 53, unknown 18.5
1848 Female, age 42, unknown 16.3
2849 Male, age 72, unknown 12.2
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Periaquaductal grey, anterior
nTPM: 14.0
1947 Male, age 18, unknown 14.6
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 13.3
Periaquaductal grey, dorsal
nTPM: 13.4
2464 Female, age 72, unknown 14.9
1840 Male, age 53, unknown 14.8
1831 Male, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 11.1
Periaquaductal grey, lateral
nTPM: 12.5
2053 Male, age 18, unknown 13.6
2272 Male, age 74, both hemispheres 12.2
2140 Male, age 76, both hemispheres 11.7
Pretectal area
nTPM: 16.0
2007 Male, age 72, unknown 20.5
1816 Male, age 51, unknown 19.0
1817 Female, age 42, unknown 18.9
1944 Female, age 72, unknown 18.4
2667 Female, age 75, unknown 17.1
1815 Male, age 53, unknown 16.0
2224 Female, age 72, unknown 14.9
2273 Male, age 74, both hemispheres 13.9
2316 Male, age 76, right hemisphere 13.4
2407 Male, age 75, both hemispheres 12.3
2825 Male, age 18, unknown 12.0
Red nucleus
nTPM: 15.2
1821 Female, age 72, unknown 20.2
2503 Female, age 72, unknown 16.5
1954 Female, age 42, unknown 15.8
2769 Male, age 72, unknown 15.3
1865 Male, age 51, unknown 15.2
1904 Male, age 53, unknown 15.2
2227 Male, age 72, unknown 14.9
2823 Male, age 76, right hemisphere 14.8
2725 Female, age 75, unknown 14.6
2785 Male, age 18, unknown 14.5
2588 Male, age 74, left hemisphere 14.3
2584 Male, age 75, left hemisphere 11.5
Substantia nigra
nTPM: 16.6
2241 Male, age 72, unknown 18.9
1916 Female, age 42, unknown 18.5
1889 Female, age 72, unknown 18.1
1851 Male, age 51, unknown 17.6
2409 Female, age 72, unknown 17.5
2665 Male, age 74, both hemispheres 16.0
2590 Female, age 75, unknown 15.7
1941 Male, age 53, unknown 15.0
2699 Male, age 18, unknown 14.4
2583 Male, age 75, right hemisphere 14.3
Superior colliculus
nTPM: 14.2
2087 Female, age 72, unknown 16.6
2261 Male, age 18, unknown 15.9
1895 Male, age 76, right hemisphere 15.8
2587 Male, age 74, left hemisphere 15.1
1796 Male, age 53, unknown 14.3
2668 Female, age 75, unknown 14.1
1995 Male, age 72, unknown 13.3
1839 Male, age 51, unknown 12.9
1913 Female, age 42, unknown 12.9
2664 Male, age 75, both hemispheres 10.8
Ventral tegmental area
nTPM: 14.7
2410 Female, age 72, unknown 17.9
1915 Female, age 42, unknown 15.4
2218 Male, age 76, both hemispheres 15.0
1942 Male, age 51, unknown 13.8
2223 Female, age 72, unknown 13.2
2021 Male, age 53, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.9
Samples: 139

Max nTPM: 21.6
Min nTPM: 7.7
Std nTPM: 2.3
Median nTPM: 12.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 21.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 17.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 17.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 16.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 16.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 16.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.8
Samples: 4

Max nTPM: 13.4
Min nTPM: 9.1
Sample A Female 13.4
Sample B Female 9.3
Sample C Male 11.2
Sample D Male 9.1
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 16.3
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 11.9
Sample C Male 16.3
Sample D Male 12.2
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.1
Min nTPM: 10.4
Sample B Female 11.1
Sample C Male 10.6
Sample D Male 10.4
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 18.7
Min nTPM: 12.3
Sample A Female 13.2
Sample B Female 12.3
Sample C Male 18.7
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 23.9
Min nTPM: 20.0
Sample A Male 20.0
Sample B Male 21.4
Sample C Female 23.9
Sample D Female 22.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71020812 Antisense, RP_050505_01_G10, Mouse strain C57BL/6J (56 days, male) 2.6
70919406 Antisense, RP_050713_01_C06, Mouse strain C57BL/6J (56 days, male) 0.7
74509585 Antisense, RP_060207_02_H10, Mouse strain C57BL/6J (56 days, male) 0.0

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