MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA Brain:38.3 nTPM
GTEx:33.2 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:33.0 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 46.4
2411 Female, age 72, unknown 36.4
2019 Male, age 18, unknown 35.7
1827 Male, age 72, unknown 35.1
2219 Male, age 76, both hemispheres 35.0
1870 Female, age 42, unknown 34.8
1833 Male, age 53, unknown 33.2
2828 Female, age 72, unknown 33.1
2666 Male, age 74, left hemisphere 33.0
1830 Male, age 51, unknown 32.9
Dorsal raphe nucleus
nTPM: 34.8
2047 Male, age 72, unknown 38.6
2298 Female, age 72, unknown 35.5
1828 Male, age 53, unknown 34.2
2016 Female, age 72, unknown 33.4
2750 Male, age 76, both hemispheres 32.4
Inferior colliculus
nTPM: 34.2
2097 Female, age 72, unknown 36.3
1890 Male, age 53, unknown 35.0
2849 Male, age 72, unknown 33.0
1848 Female, age 42, unknown 32.3
Median raphe nucleus
nTPM: 36.7
2220 Male, age 76, midline 36.7
Periaquaductal grey, anterior
nTPM: 35.2
2502 Female, age 75, unknown 37.6
1947 Male, age 18, unknown 34.4
1795 Male, age 51, unknown 33.7
Periaquaductal grey, dorsal
nTPM: 33.0
1840 Male, age 53, unknown 37.6
1831 Male, age 72, unknown 32.4
2850 Male, age 76, both hemispheres 31.0
2464 Female, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 32.0
2272 Male, age 74, both hemispheres 33.9
2053 Male, age 18, unknown 33.5
2140 Male, age 76, both hemispheres 28.7
Pretectal area
nTPM: 34.3
2007 Male, age 72, unknown 39.4
1816 Male, age 51, unknown 38.8
1817 Female, age 42, unknown 36.7
1815 Male, age 53, unknown 35.4
1944 Female, age 72, unknown 35.4
2407 Male, age 75, both hemispheres 33.1
2273 Male, age 74, both hemispheres 32.7
2224 Female, age 72, unknown 32.4
2825 Male, age 18, unknown 32.2
2667 Female, age 75, unknown 32.0
2316 Male, age 76, right hemisphere 29.2
Red nucleus
nTPM: 34.8
1821 Female, age 72, unknown 39.0
2503 Female, age 72, unknown 37.6
2584 Male, age 75, left hemisphere 36.2
1904 Male, age 53, unknown 35.7
2785 Male, age 18, unknown 35.5
2588 Male, age 74, left hemisphere 35.4
1954 Female, age 42, unknown 34.6
2725 Female, age 75, unknown 34.6
1865 Male, age 51, unknown 34.1
2769 Male, age 72, unknown 33.6
2227 Male, age 72, unknown 31.3
2823 Male, age 76, right hemisphere 30.5
Substantia nigra
nTPM: 38.3
2409 Female, age 72, unknown 44.9
1916 Female, age 42, unknown 41.7
2241 Male, age 72, unknown 40.7
1851 Male, age 51, unknown 39.3
1889 Female, age 72, unknown 38.2
2583 Male, age 75, right hemisphere 36.7
2665 Male, age 74, both hemispheres 36.4
2699 Male, age 18, unknown 35.8
1941 Male, age 53, unknown 35.1
2590 Female, age 75, unknown 34.1
Superior colliculus
nTPM: 33.8
2668 Female, age 75, unknown 37.9
2261 Male, age 18, unknown 36.3
2664 Male, age 75, both hemispheres 34.8
1895 Male, age 76, right hemisphere 34.7
1796 Male, age 53, unknown 34.0
2087 Female, age 72, unknown 34.0
1839 Male, age 51, unknown 33.3
1913 Female, age 42, unknown 32.1
2587 Male, age 74, left hemisphere 31.2
1995 Male, age 72, unknown 30.1
Ventral tegmental area
nTPM: 36.1
2410 Female, age 72, unknown 42.0
1915 Female, age 42, unknown 37.7
1942 Male, age 51, unknown 35.8
2218 Male, age 76, both hemispheres 34.0
2021 Male, age 53, unknown 33.7
2223 Female, age 72, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 44.3
Min nTPM: 22.2
Std nTPM: 4.4
Median nTPM: 33.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 44.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 44.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 43.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 41.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 40.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 40.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 14.9
Sample A Female 20.8
Sample B Female 16.9
Sample C Male 17.8
Sample D Male 14.9
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 21.1
Min nTPM: 17.0
Sample A Female 19.1
Sample B Female 17.0
Sample C Male 21.1
Sample D Male 18.8
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 18.8
Min nTPM: 15.2
Sample B Female 16.7
Sample C Male 18.8
Sample D Male 15.2
Superior colliculi
nTPM: 20.3
Samples: 4

Max nTPM: 22.8
Min nTPM: 17.7
Sample A Female 22.1
Sample B Female 22.8
Sample C Male 17.7
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 33.9
Min nTPM: 31.0
Sample A Male 31.0
Sample B Male 33.9
Sample C Female 33.9
Sample D Female 33.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
564643 Antisense, RP_040826_01_A11, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org