MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:19.7 nTPM
GTEx:35.6 nTPM
FANTOM5:155.6 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:13.8 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2019 Male, age 18, unknown 23.7
1870 Female, age 42, unknown 21.7
1830 Male, age 51, unknown 19.1
2411 Female, age 72, unknown 19.0
2828 Female, age 72, unknown 18.2
1833 Male, age 53, unknown 16.8
1827 Male, age 72, unknown 15.7
2219 Male, age 76, both hemispheres 15.7
2586 Male, age 75, left hemisphere 15.4
2666 Male, age 74, left hemisphere 13.8
Dorsal raphe nucleus
nTPM: 19.3
1828 Male, age 53, unknown 26.0
2047 Male, age 72, unknown 19.9
2016 Female, age 72, unknown 19.6
2750 Male, age 76, both hemispheres 17.3
2298 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 17.0
1890 Male, age 53, unknown 17.4
1848 Female, age 42, unknown 17.1
2849 Male, age 72, unknown 16.9
2097 Female, age 72, unknown 16.4
Median raphe nucleus
nTPM: 17.3
2220 Male, age 76, midline 17.3
Periaquaductal grey, anterior
nTPM: 17.3
2502 Female, age 75, unknown 20.8
1947 Male, age 18, unknown 16.3
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 19.7
1840 Male, age 53, unknown 20.8
2850 Male, age 76, both hemispheres 20.7
2464 Female, age 72, unknown 20.5
1831 Male, age 72, unknown 16.6
Periaquaductal grey, lateral
nTPM: 19.2
2140 Male, age 76, both hemispheres 21.7
2053 Male, age 18, unknown 19.0
2272 Male, age 74, both hemispheres 17.1
Pretectal area
nTPM: 19.2
2007 Male, age 72, unknown 23.2
2273 Male, age 74, both hemispheres 22.9
1817 Female, age 42, unknown 22.8
2667 Female, age 75, unknown 20.9
2407 Male, age 75, both hemispheres 19.8
2316 Male, age 76, right hemisphere 17.8
1815 Male, age 53, unknown 17.6
1944 Female, age 72, unknown 17.0
2224 Female, age 72, unknown 16.8
1816 Male, age 51, unknown 16.2
2825 Male, age 18, unknown 15.7
Red nucleus
nTPM: 19.2
1821 Female, age 72, unknown 24.8
2503 Female, age 72, unknown 24.3
2823 Male, age 76, right hemisphere 21.7
1865 Male, age 51, unknown 20.6
1904 Male, age 53, unknown 19.8
2588 Male, age 74, left hemisphere 19.3
1954 Female, age 42, unknown 18.9
2584 Male, age 75, left hemisphere 16.7
2769 Male, age 72, unknown 16.7
2227 Male, age 72, unknown 16.6
2785 Male, age 18, unknown 15.6
2725 Female, age 75, unknown 14.9
Substantia nigra
nTPM: 19.1
2241 Male, age 72, unknown 25.3
1916 Female, age 42, unknown 24.9
1851 Male, age 51, unknown 22.8
1941 Male, age 53, unknown 19.1
2583 Male, age 75, right hemisphere 18.6
2699 Male, age 18, unknown 18.3
1889 Female, age 72, unknown 16.3
2590 Female, age 75, unknown 16.2
2409 Female, age 72, unknown 16.1
2665 Male, age 74, both hemispheres 13.8
Superior colliculus
nTPM: 18.1
2261 Male, age 18, unknown 21.6
2668 Female, age 75, unknown 19.9
2587 Male, age 74, left hemisphere 19.4
1895 Male, age 76, right hemisphere 19.0
1913 Female, age 42, unknown 19.0
1839 Male, age 51, unknown 18.8
1995 Male, age 72, unknown 17.8
2087 Female, age 72, unknown 16.2
2664 Male, age 75, both hemispheres 15.0
1796 Male, age 53, unknown 14.5
Ventral tegmental area
nTPM: 17.9
1915 Female, age 42, unknown 19.2
2410 Female, age 72, unknown 19.2
2223 Female, age 72, unknown 18.7
2218 Male, age 76, both hemispheres 18.1
1942 Male, age 51, unknown 16.1
2021 Male, age 53, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.6
Samples: 139

Max nTPM: 69.1
Min nTPM: 18.6
Std nTPM: 9.3
Median nTPM: 33.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 69.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 64.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 59.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 58.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 58.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 54.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 52.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 51.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 50.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 49.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.6
FF:10158-103A5 76 years, female 155.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 20.9
Min nTPM: 16.8
Sample A Female 20.9
Sample B Female 18.3
Sample C Male 18.0
Sample D Male 16.8
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 28.0
Min nTPM: 17.5
Sample A Female 28.0
Sample B Female 20.4
Sample C Male 17.6
Sample D Male 17.5
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 32.4
Min nTPM: 24.8
Sample B Female 24.8
Sample C Male 32.4
Sample D Male 27.3
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 21.9
Min nTPM: 17.9
Sample A Female 20.4
Sample B Female 21.9
Sample C Male 17.9
Sample D Male 18.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 14.6
Min nTPM: 12.8
Sample A Male 14.6
Sample B Male 13.5
Sample C Female 14.4
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69028378 Antisense, RP_050316_01_B11, Mouse strain C57BL/6J (56 days, male) 8.2

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