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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
137.8
nTPM
Monaco:
42.6
nTPM
Schmiedel:
36.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
137.8
HPA sample
nTPM
gdT-cell nTPM: 52.8
Samples: 6
Max nTPM: 57.7
Min nTPM: 47.4
P10809_1007
50.9
P10809_1022
57.1
P10809_1041
56.1
P10809_1060
47.4
P10809_1077
47.7
P10809_1098
57.7
MAIT T-cell nTPM: 73.1
Samples: 6
Max nTPM: 86.1
Min nTPM: 52.7
P10809_1006
63.7
P10809_1024
73.9
P10809_1043
86.1
P10809_1062
80.9
P10809_1083
52.7
P10809_1097
81.0
Memory CD4 T-cell nTPM: 91.7
Samples: 6
Max nTPM: 113.9
Min nTPM: 65.3
P10809_1014
93.1
P10809_1026
104.9
P10809_1045
103.4
P10809_1064
69.3
P10809_1086
65.3
P10809_1113
113.9
Memory CD8 T-cell nTPM: 72.5
Samples: 5
Max nTPM: 92.0
Min nTPM: 55.3
P10809_1012
66.5
P10809_1027
55.3
P10809_1046
90.4
P10809_1065
58.3
P10809_1111
92.0
Naive CD4 T-cell nTPM: 137.8
Samples: 6
Max nTPM: 161.4
Min nTPM: 107.3
P10809_1015
137.7
P10809_1030
131.8
P10809_1049
148.2
P10809_1068
140.5
P10809_1085
107.3
P10809_1112
161.4
Naive CD8 T-cell nTPM: 111.5
Samples: 6
Max nTPM: 178.6
Min nTPM: 48.9
P10809_1016
178.6
P10809_1031
104.6
P10809_1050
92.2
P10809_1069
93.8
P10809_1087
48.9
P10809_1110
151.0
T-reg nTPM: 86.0
Samples: 6
Max nTPM: 101.6
Min nTPM: 75.4
P10809_1018
75.4
P10809_1037
84.4
P10809_1056
77.8
P10809_1075
100.4
P10809_1094
101.6
P10809_1106
76.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
42.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 28.8
Samples: 4
Max nTPM: 33.7
Min nTPM: 22.8
RHH5202_R3573
22.8
RHH5230_R3602
25.7
RHH5259_R3631
32.9
RHH5288_R3660
33.7
Effector memory CD8 T-cell nTPM: 18.0
Samples: 4
Max nTPM: 24.8
Min nTPM: 12.7
RHH5203_R3574
18.7
RHH5231_R3603
12.7
RHH5260_R3632
24.8
RHH5289_R3661
15.8
MAIT T-cell nTPM: 25.3
Samples: 4
Max nTPM: 33.2
Min nTPM: 15.0
RHH5233_R3605
15.0
RHH5205_R3576
25.3
RHH5262_R3634
27.8
RHH5297_R3663
33.2
Memory CD4 T-cell TFH nTPM: 33.1
Samples: 4
Max nTPM: 42.2
Min nTPM: 21.2
RHH5300_R3666
38.7
RHH5236_R3608
42.2
RHH5265_R3637
21.2
RHH5208_R3579
30.3
Memory CD4 T-cell Th1 nTPM: 37.8
Samples: 4
Max nTPM: 46.9
Min nTPM: 27.9
RHH5210_R3581
33.0
RHH5302_R3668
46.9
RHH5238_R3610
43.3
RHH5267_R3639
27.9
Memory CD4 T-cell Th1/Th17 nTPM: 25.0
Samples: 4
Max nTPM: 35.9
Min nTPM: 16.4
RHH5303_R3669
35.9
RHH5211_R3582
26.8
RHH5239_R3611
16.4
RHH5268_R3640
21.0
Memory CD4 T-cell Th17 nTPM: 20.4
Samples: 4
Max nTPM: 23.9
Min nTPM: 14.9
RHH5304_R3670
14.9
RHH5212_R3583
23.9
RHH5240_R3612
23.5
RHH5269_R3641
19.3
Memory CD4 T-cell Th2 nTPM: 27.8
Samples: 4
Max nTPM: 36.5
Min nTPM: 21.6
RHH5305_R3671
36.5
RHH5213_R3584
21.7
RHH5241_R3613
31.4
RHH5270_R3642
21.6
Naive CD4 T-cell nTPM: 42.6
Samples: 4
Max nTPM: 65.8
Min nTPM: 25.5
RHH5306_R3672
48.1
RHH5214_R3585
65.8
RHH5242_R3614
30.9
RHH5271_R3643
25.5
Naive CD8 T-cell nTPM: 37.7
Samples: 4
Max nTPM: 50.0
Min nTPM: 30.0
RHH5201_R3572
31.7
RHH5229_R3601
39.1
RHH5258_R3630
30.0
RHH5287_R3659
50.0
Non-Vd2 gdTCR nTPM: 19.6
Samples: 4
Max nTPM: 24.1
Min nTPM: 16.1
RHH5235_R3607
16.1
RHH5264_R3636
19.2
RHH5207_R3578
18.9
RHH5299_R3665
24.1
T-reg nTPM: 32.5
Samples: 4
Max nTPM: 45.2
Min nTPM: 18.9
RHH5301_R3667
45.2
RHH5237_R3609
18.9
RHH5266_R3638
37.7
RHH5209_R3580
28.3
Terminal effector memory CD4 T-cell nTPM: 12.3
Samples: 2
Max nTPM: 12.4
Min nTPM: 12.2
RHH5243_R3615
12.2
RHH5272_R3644
12.4
Terminal effector memory CD8 T-cell nTPM: 27.9
Samples: 4
Max nTPM: 52.6
Min nTPM: 12.1
RHH5232_R3604
12.1
RHH5204_R3575
52.6
RHH5261_R3633
23.1
RHH5296_R3662
23.8
Vd2 gdTCR nTPM: 30.4
Samples: 4
Max nTPM: 41.8
Min nTPM: 19.3
RHH5234_R3606
19.3
RHH5206_R3577
41.8
RHH5263_R3635
21.0
RHH5298_R3664
39.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
