MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:50.9 nTPM
GTEx:38.9 nTPM
FANTOM5:94.2 Scaled Tags Per Million
Pig:80.4 nTPM
Mouse:29.9 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
2666 Male, age 74, left hemisphere 56.1
2586 Male, age 75, left hemisphere 50.7
1830 Male, age 51, unknown 47.0
2828 Female, age 72, unknown 46.0
1870 Female, age 42, unknown 45.3
2019 Male, age 18, unknown 44.4
1833 Male, age 53, unknown 42.4
2411 Female, age 72, unknown 42.2
1827 Male, age 72, unknown 41.0
2219 Male, age 76, both hemispheres 36.0
Dorsal raphe nucleus
nTPM: 40.9
2298 Female, age 72, unknown 43.2
1828 Male, age 53, unknown 42.8
2750 Male, age 76, both hemispheres 42.5
2047 Male, age 72, unknown 40.0
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 46.9
1890 Male, age 53, unknown 53.7
2849 Male, age 72, unknown 49.6
1848 Female, age 42, unknown 44.5
2097 Female, age 72, unknown 39.8
Median raphe nucleus
nTPM: 45.5
2220 Male, age 76, midline 45.5
Periaquaductal grey, anterior
nTPM: 42.4
2502 Female, age 75, unknown 43.6
1795 Male, age 51, unknown 43.1
1947 Male, age 18, unknown 40.5
Periaquaductal grey, dorsal
nTPM: 43.6
2850 Male, age 76, both hemispheres 52.3
1831 Male, age 72, unknown 45.1
1840 Male, age 53, unknown 44.9
2464 Female, age 72, unknown 32.1
Periaquaductal grey, lateral
nTPM: 46.4
2272 Male, age 74, both hemispheres 48.9
2140 Male, age 76, both hemispheres 46.3
2053 Male, age 18, unknown 44.2
Pretectal area
nTPM: 47.7
1817 Female, age 42, unknown 56.6
1816 Male, age 51, unknown 54.3
2007 Male, age 72, unknown 51.9
1944 Female, age 72, unknown 51.2
2667 Female, age 75, unknown 50.9
1815 Male, age 53, unknown 50.4
2407 Male, age 75, both hemispheres 42.9
2273 Male, age 74, both hemispheres 42.7
2316 Male, age 76, right hemisphere 41.6
2825 Male, age 18, unknown 41.6
2224 Female, age 72, unknown 40.6
Red nucleus
nTPM: 44.6
2785 Male, age 18, unknown 56.8
1865 Male, age 51, unknown 55.3
2584 Male, age 75, left hemisphere 47.3
2725 Female, age 75, unknown 47.0
2227 Male, age 72, unknown 44.9
2769 Male, age 72, unknown 43.4
2588 Male, age 74, left hemisphere 41.1
1954 Female, age 42, unknown 40.8
2503 Female, age 72, unknown 40.8
2823 Male, age 76, right hemisphere 40.1
1821 Female, age 72, unknown 40.0
1904 Male, age 53, unknown 37.8
Substantia nigra
nTPM: 50.9
1941 Male, age 53, unknown 60.7
2699 Male, age 18, unknown 57.0
2665 Male, age 74, both hemispheres 56.4
1916 Female, age 42, unknown 55.9
1889 Female, age 72, unknown 51.2
2409 Female, age 72, unknown 50.7
1851 Male, age 51, unknown 49.3
2590 Female, age 75, unknown 43.9
2583 Male, age 75, right hemisphere 43.6
2241 Male, age 72, unknown 40.3
Superior colliculus
nTPM: 43.8
2087 Female, age 72, unknown 53.7
1995 Male, age 72, unknown 49.9
1913 Female, age 42, unknown 49.1
2664 Male, age 75, both hemispheres 46.6
2587 Male, age 74, left hemisphere 46.1
2668 Female, age 75, unknown 42.5
1796 Male, age 53, unknown 38.8
2261 Male, age 18, unknown 37.8
1895 Male, age 76, right hemisphere 37.4
1839 Male, age 51, unknown 36.1
Ventral tegmental area
nTPM: 47.9
2223 Female, age 72, unknown 54.3
2218 Male, age 76, both hemispheres 52.9
2410 Female, age 72, unknown 51.5
1915 Female, age 42, unknown 49.6
2021 Male, age 53, unknown 40.6
1942 Male, age 51, unknown 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 62.6
Min nTPM: 26.0
Std nTPM: 7.0
Median nTPM: 37.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 56.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 53.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 53.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 52.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 50.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 48.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.2
FF:10158-103A5 76 years, female 94.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.2
Samples: 4

Max nTPM: 81.4
Min nTPM: 58.7
Sample A Female 81.4
Sample B Female 58.7
Sample C Male 75.0
Sample D Male 77.5
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 126.4
Min nTPM: 62.3
Sample A Female 126.4
Sample B Female 68.6
Sample C Male 62.3
Sample D Male 64.2
Periaqueductal gray
nTPM: 61.1
Samples: 3

Max nTPM: 65.4
Min nTPM: 57.3
Sample B Female 60.7
Sample C Male 65.4
Sample D Male 57.3
Superior colliculi
nTPM: 69.3
Samples: 4

Max nTPM: 85.0
Min nTPM: 53.1
Sample A Female 85.0
Sample B Female 53.1
Sample C Male 66.1
Sample D Male 72.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 31.3
Min nTPM: 28.7
Sample A Male 31.0
Sample B Male 28.8
Sample C Female 28.7
Sample D Female 31.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
532650 Antisense, RP_040825_01_A06, Mouse strain C57BL/6J (56 days, male) 4.2
77910645 Antisense, RP_070208_04_E05, Mouse strain C57BL/6J (56 days, male) 1.6

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