MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:17.4 nTPM
GTEx:20.5 nTPM
FANTOM5:42.7 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:11.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
2019 Male, age 18, unknown 18.6
1827 Male, age 72, unknown 16.8
2411 Female, age 72, unknown 16.8
2586 Male, age 75, left hemisphere 15.1
1870 Female, age 42, unknown 14.3
2666 Male, age 74, left hemisphere 14.2
1830 Male, age 51, unknown 14.0
1833 Male, age 53, unknown 13.6
2219 Male, age 76, both hemispheres 13.2
2828 Female, age 72, unknown 12.0
Dorsal raphe nucleus
nTPM: 15.0
2298 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 14.9
2047 Male, age 72, unknown 14.9
2016 Female, age 72, unknown 14.8
2750 Male, age 76, both hemispheres 13.9
Inferior colliculus
nTPM: 17.4
2097 Female, age 72, unknown 21.6
1890 Male, age 53, unknown 17.9
1848 Female, age 42, unknown 17.1
2849 Male, age 72, unknown 13.1
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Periaquaductal grey, anterior
nTPM: 16.4
1947 Male, age 18, unknown 17.9
2502 Female, age 75, unknown 16.7
1795 Male, age 51, unknown 14.5
Periaquaductal grey, dorsal
nTPM: 14.2
2464 Female, age 72, unknown 15.5
1831 Male, age 72, unknown 15.0
1840 Male, age 53, unknown 15.0
2850 Male, age 76, both hemispheres 11.2
Periaquaductal grey, lateral
nTPM: 12.7
2272 Male, age 74, both hemispheres 13.7
2053 Male, age 18, unknown 13.4
2140 Male, age 76, both hemispheres 11.2
Pretectal area
nTPM: 16.7
2007 Male, age 72, unknown 22.0
1817 Female, age 42, unknown 21.0
1816 Male, age 51, unknown 19.5
1944 Female, age 72, unknown 19.1
2273 Male, age 74, both hemispheres 16.8
1815 Male, age 53, unknown 16.4
2224 Female, age 72, unknown 14.7
2667 Female, age 75, unknown 14.2
2316 Male, age 76, right hemisphere 13.9
2407 Male, age 75, both hemispheres 13.2
2825 Male, age 18, unknown 12.9
Red nucleus
nTPM: 15.0
1821 Female, age 72, unknown 21.3
2785 Male, age 18, unknown 17.2
1954 Female, age 42, unknown 15.4
2725 Female, age 75, unknown 15.4
1865 Male, age 51, unknown 14.5
2588 Male, age 74, left hemisphere 14.4
2823 Male, age 76, right hemisphere 14.3
2503 Female, age 72, unknown 13.9
1904 Male, age 53, unknown 13.8
2227 Male, age 72, unknown 13.7
2769 Male, age 72, unknown 13.6
2584 Male, age 75, left hemisphere 12.7
Substantia nigra
nTPM: 16.0
2241 Male, age 72, unknown 19.8
1889 Female, age 72, unknown 18.8
1941 Male, age 53, unknown 18.4
1916 Female, age 42, unknown 17.3
2409 Female, age 72, unknown 16.5
1851 Male, age 51, unknown 15.5
2590 Female, age 75, unknown 14.8
2583 Male, age 75, right hemisphere 14.7
2665 Male, age 74, both hemispheres 12.3
2699 Male, age 18, unknown 11.9
Superior colliculus
nTPM: 15.4
1895 Male, age 76, right hemisphere 18.2
2668 Female, age 75, unknown 17.8
2587 Male, age 74, left hemisphere 16.5
1796 Male, age 53, unknown 16.0
1839 Male, age 51, unknown 15.8
2087 Female, age 72, unknown 15.7
2261 Male, age 18, unknown 15.4
1913 Female, age 42, unknown 13.5
2664 Male, age 75, both hemispheres 13.4
1995 Male, age 72, unknown 11.8
Ventral tegmental area
nTPM: 14.7
2410 Female, age 72, unknown 18.3
1915 Female, age 42, unknown 15.3
1942 Male, age 51, unknown 14.6
2223 Female, age 72, unknown 13.6
2218 Male, age 76, both hemispheres 13.5
2021 Male, age 53, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 43.1
Min nTPM: 8.5
Std nTPM: 4.5
Median nTPM: 20.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 36.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 32.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 31.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 28.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 27.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 27.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 25.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.7
FF:10158-103A5 76 years, female 42.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 18.0
Min nTPM: 9.5
Sample A Female 18.0
Sample B Female 9.5
Sample C Male 14.5
Sample D Male 9.8
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.9
Min nTPM: 11.5
Sample A Female 14.9
Sample B Female 11.5
Sample C Male 14.9
Sample D Male 14.2
Periaqueductal gray
nTPM: 11.5
Samples: 3

Max nTPM: 12.4
Min nTPM: 11.0
Sample B Female 11.1
Sample C Male 12.4
Sample D Male 11.0
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 16.0
Min nTPM: 11.3
Sample A Female 16.0
Sample B Female 11.3
Sample C Male 15.0
Sample D Male 13.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 11.8
Sample C Female 12.0
Sample D Female 11.3

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